Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B18
         (667 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05120.1 68415.m00539 expressed protein                             31   0.52 
At1g48730.1 68414.m05453 expressed protein                             29   2.8  
At5g51660.1 68418.m06405 cleavage and polyadenylation specificit...    29   3.7  
At5g38570.1 68418.m04664 F-box family protein contains F-box dom...    28   4.9  
At2g34210.1 68415.m04186 KOW domain-containing transcription fac...    28   4.9  
At1g12020.1 68414.m01388 expressed protein                             28   4.9  
At5g39440.1 68418.m04777 Snf1-related protein kinase, putative s...    28   6.4  
At2g40550.1 68415.m05003 expressed protein                             28   6.4  
At2g31400.1 68415.m03837 pentatricopeptide (PPR) repeat-containi...    27   8.5  
At2g28260.1 68415.m03430 cyclic nucleotide-regulated ion channel...    27   8.5  

>At2g05120.1 68415.m00539 expressed protein 
          Length = 1234

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
 Frame = -1

Query: 625  WMPKFKNLSPWYLPDELPNDTLELAKMAIHRITS---VDPTMKIEIWQTEEI------EA 473
            W P  + L PW+    + N    +A   +H +T    +D + K +I+   E+      EA
Sbjct: 819  WYPPLEGLIPWHSQTVVCNGLWCIASFMLHLLTEASRIDISAKSDIYTHLEVLTEVLLEA 878

Query: 472  CIDKTWIVSAQSETQKILLSE 410
            C   T+    + E  K LL+E
Sbjct: 879  CAGSTFAKLEREEENKGLLNE 899


>At1g48730.1 68414.m05453 expressed protein
          Length = 191

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 523 VDPTMKIEIWQTEEIEACIDKTWIVS 446
           V PT+KI +W   + EAC+D  W+ +
Sbjct: 102 VSPTLKIVVWAETKEEACVD--WLAT 125


>At5g51660.1 68418.m06405 cleavage and polyadenylation specificity
           factor (CPSF) A subunit C-terminal domain-containing
           protein similar to SP|Q9EPU4 Cleavage and
           polyadenylation specificity factor, 160 kDa subunit
           (CPSF 160 kDa subunit) {Mus musculus}; contains Pfam
           profile PF03178: CPSF A subunit region
          Length = 1442

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
 Frame = -1

Query: 640 WRMLYWMPKFKNLSPWYLPDELPNDTLELAKMAIH-RITSVDPTMKIEIWQTEEI---EA 473
           ++M++W    +N +  Y+   L + TL++  +++H  I +  P  K  I     +    A
Sbjct: 6   YKMMHWPTGVENCASGYITHSLSDSTLQIPIVSVHDDIEAEWPNPKRGIGPLPNVVITAA 65

Query: 472 CIDKTWIVSAQSE--TQKILLSEQPPDEPLVVRGPYEVYLKEQVVTYFTLLGKV 317
            I + +IV AQ E  TQ+ L + +      V+ G Y V L  ++V ++ L G V
Sbjct: 66  NILEVYIVRAQEEGNTQE-LRNPKLAKRGGVMDGVYGVSL--ELVCHYRLHGNV 116


>At5g38570.1 68418.m04664 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 379

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
 Frame = -1

Query: 652 LXKFWRMLY-WMPKFKNLSPWYLPDELPN--DTLELAKMAIHRITSVDPTMKIEIWQTEE 482
           L K W  L+ W+P  + +SPW   D  P   D +   K+ IHR   ++  + I I     
Sbjct: 30  LSKRWEFLWMWLPNLEFVSPW---DSRPGIVDFIN-KKLPIHRAPVIE-RLCIHINSNPH 84

Query: 481 IEACIDKTWIVSAQS 437
           I+    K WI  A S
Sbjct: 85  IKPEYIKRWIEIAVS 99


>At2g34210.1 68415.m04186 KOW domain-containing transcription factor
           family protein
          Length = 990

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = -1

Query: 304 KDDFDQDDVSNLKKPSGIPGFIGQTTLPVVKCTVHEQDDGTIVAVC 167
           KDD++ DDV+++ + + +P  +    L +VKC +  + +   VAVC
Sbjct: 146 KDDYELDDVNDVDQQALLPS-VRDPKLWLVKCAIGRERE---VAVC 187


>At1g12020.1 68414.m01388 expressed protein
          Length = 226

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 75  ITGRFDRTELSYFSNNLIHDNKESRDDEPV-AHTATIVPSSCSCT 206
           +TG+ DR + S  S++L+  +  S DD  + +     V +SC CT
Sbjct: 128 VTGKKDRRKRSGKSSSLLASSSFSTDDSEIPSRLGESVVNSCPCT 172


>At5g39440.1 68418.m04777 Snf1-related protein kinase, putative
           similar to SNF1-related protein kinase KIN10 (EC
           2.7.1.-) (AKIN10) [Arabidopsis thaliana]
           SWISS-PROT:Q38997
          Length = 494

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 577 LPNDTLELAKMAIHRITSVDPTMKIEIWQTEE 482
           LPN     A+  I R+  VDPTM+I I +  +
Sbjct: 235 LPNHLSHFARDLIPRMLMVDPTMRISITEIRQ 266


>At2g40550.1 68415.m05003 expressed protein
          Length = 589

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 72  KITGRFDRTELSYFSNNLIHDNKES 146
           K+ GR D   +   S NLIH NKES
Sbjct: 340 KVHGRVDNVAVGKLSLNLIHLNKES 364


>At2g31400.1 68415.m03837 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587, post-transcriptional control of
           chloroplast gene expression CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 918

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = -1

Query: 388 VVRGPYEVYLKEQVVTYFTLLGKVRPEHKDDFDQDDVSNLKKPSGIPGFIGQTTL 224
           ++R    V +K+ VVTY  LLG    + K D  +   + +K+   +P  +  +TL
Sbjct: 466 ILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTL 520


>At2g28260.1 68415.m03430 cyclic nucleotide-regulated ion channel,
           putative (CNGC15) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (cngc6) GI:4581207 from
           [Arabidopsis thaliana]
          Length = 678

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 281 CIKFKETFRNTWFYWSNYIT 222
           C + ++  RN+WF WSN  T
Sbjct: 290 CRRLEDPQRNSWFEWSNITT 309


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,791,462
Number of Sequences: 28952
Number of extensions: 281857
Number of successful extensions: 912
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)