Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_B17
(577 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0300 + 27681204-27681656,27681745-27681840,27681933-276820... 31 0.66
02_05_0044 - 25375239-25376233,25377233-25377364,25377586-25378504 29 2.7
06_03_0871 - 25562767-25563509,25563889-25565776 29 3.5
04_03_0298 + 14080353-14080927,14081041-14081554 28 6.1
04_03_0293 - 14001443-14001956,14002070-14002644 28 6.1
02_05_0045 - 25393185-25394431,25394837-25395166,25395450-25396386 28 6.1
02_05_0043 - 25366965-25368211,25368555-25369070,25369185-25370091 28 6.1
10_08_0521 + 18500105-18500529,18501216-18501284,18501467-185015... 27 8.1
>02_05_0300 +
27681204-27681656,27681745-27681840,27681933-27682022,
27682126-27682227,27682310-27682456,27683608-27683748,
27683749-27683808,27685133-27685230,27685308-27685410,
27685954-27686037
Length = 457
Score = 31.1 bits (67), Expect = 0.66
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -1
Query: 361 QEEGKLDNPQSENAALTVTGQYAYVAP-DGKHYTVTFTAGPNGFQPXTSL 215
Q E L P + AL V + + A DG+ F+A NGF+P SL
Sbjct: 220 QAEMNLTGPTGQVYALAVGNELLFAATQDGRILAWRFSAATNGFEPAASL 269
>02_05_0044 - 25375239-25376233,25377233-25377364,25377586-25378504
Length = 681
Score = 29.1 bits (62), Expect = 2.7
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Frame = -1
Query: 421 SNVEPDGYSFAYETSD-GTSRQEEGKLDNPQSENAALTVTGQYAYVAPDGKHYTVTFTAG 245
SN+ DG SF + SD G SR LD + V G + Y+ P+ H T T
Sbjct: 471 SNILLDG-SFTTKVSDFGASRSVS--LDET---HVVTIVQGTFGYLDPEYYH-TGQLTEK 523
Query: 244 PNGFQPXTSLGQKXKPQKPVYINNTPSQHKLDNDFV 137
+ + L + +KP++IN+ ++ L + FV
Sbjct: 524 SDVYSFGVILVELLTRKKPIFINDVGTKQSLSHYFV 559
>06_03_0871 - 25562767-25563509,25563889-25565776
Length = 876
Score = 28.7 bits (61), Expect = 3.5
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Frame = -1
Query: 511 KYVTVACVLVALCSGAPQQNPQDVQILRFDSNV--EPDGYSFAYETSDGTSRQEEGKLDN 338
++V V VLV +C GA N V +L F V +P G + +D + G + N
Sbjct: 4 RWVVVFWVLVVMCRGACGLNADGVLLLSFKYAVTADPLGALAGWGYADESPCAWNGVVCN 63
Query: 337 --PQSENAALTVTGQYAYVAPDGKHYTVTFTAGPNG 236
PQ++ AA A +G + + NG
Sbjct: 64 GFPQADAAAAWTANVTGVAAAEGGNSSAAVPVPSNG 99
>04_03_0298 + 14080353-14080927,14081041-14081554
Length = 362
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = -1
Query: 514 LKYVTVACVLVALCSGAPQQNPQDVQILRFDSNVEPDGYSFAY 386
L +V VA VLV L G V L+F + PDG AY
Sbjct: 314 LLFVAVAGVLVDLIMGTGGNVAPPVTDLKFHTATMPDGMQLAY 356
>04_03_0293 - 14001443-14001956,14002070-14002644
Length = 362
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = -1
Query: 514 LKYVTVACVLVALCSGAPQQNPQDVQILRFDSNVEPDGYSFAY 386
L +V VA VLV L G V L+F + PDG AY
Sbjct: 314 LLFVAVAGVLVDLIMGTGGNVAPPVTDLKFHTATMPDGMQLAY 356
>02_05_0045 - 25393185-25394431,25394837-25395166,25395450-25396386
Length = 837
Score = 27.9 bits (59), Expect = 6.1
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Frame = -1
Query: 421 SNVEPDGYSFAYETSD-GTSRQEEGKLDNPQSENAALTVTGQYAYVAPDGKHYTVTFTAG 245
SN+ DG +F + SD G SR LD + V G + Y+ P+ H T T
Sbjct: 627 SNILLDG-NFTTKVSDFGASRSVS--LDET---HVVTIVQGTFGYLDPEYYH-TGQLTEK 679
Query: 244 PNGFQPXTSLGQKXKPQKPVYINNTPSQHKLDNDFV 137
+ + L + +KP++IN+ ++ L + FV
Sbjct: 680 SDVYSFGVILVELLTRKKPIFINDVGTKQSLSHYFV 715
>02_05_0043 - 25366965-25368211,25368555-25369070,25369185-25370091
Length = 889
Score = 27.9 bits (59), Expect = 6.1
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Frame = -1
Query: 421 SNVEPDGYSFAYETSD-GTSRQEEGKLDNPQSENAALTVTGQYAYVAPDGKHYTVTFTAG 245
SN+ DG SF + SD G SR LD + V G + Y+ P+ H T T
Sbjct: 679 SNILLDG-SFTTKVSDFGASRSVS--LDET---HVVTIVQGTFGYLDPEYYH-TGQLTEK 731
Query: 244 PNGFQPXTSLGQKXKPQKPVYINNTPSQHKLDNDFV 137
+ + L + +KP++IN ++ L + FV
Sbjct: 732 SDVYSFGVILVELLIRKKPIFINEAGAKQSLSHYFV 767
>10_08_0521 +
18500105-18500529,18501216-18501284,18501467-18501555,
18501726-18501838,18502023-18502124,18502576-18502663,
18502795-18503361,18503766-18504149,18504168-18504384,
18504466-18504548,18505174-18505256,18505796-18506032,
18506481-18506658,18506814-18507328,18507740-18507916,
18508385-18508768,18508885-18509031
Length = 1285
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = -1
Query: 388 YETSDGTSRQEEGKLDNPQSENAAL---TVTGQYAYVAPDGKHYTVTFTAGPNG 236
Y S+G +++ ++DN +E A++ V+ AYV+P+ + T T +G
Sbjct: 410 YLVSEGAQTKKQAQVDNETTEVASIHCCPVSNFSAYVSPEAAAQSATTTTWGSG 463
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,316,641
Number of Sequences: 37544
Number of extensions: 307745
Number of successful extensions: 675
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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