Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B17
         (577 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08920.1 68417.m01469 cryptochrome 1 apoprotein (CRY1) / flav...    29   2.2  
At1g17340.1 68414.m02113 phosphoinositide phosphatase family pro...    29   2.9  
At4g38640.1 68417.m05469 choline transporter-related contains we...    28   5.1  
At3g04760.1 68416.m00512 pentatricopeptide (PPR) repeat-containi...    28   5.1  
At1g69990.1 68414.m08055 leucine-rich repeat transmembrane prote...    28   5.1  
At5g47690.1 68418.m05887 expressed protein                             27   6.8  
At4g21380.1 68417.m03089 S-locus protein kinase, putative (ARK3)...    27   6.8  
At3g04130.1 68416.m00437 pentatricopeptide (PPR) repeat-containi...    27   6.8  

>At4g08920.1 68417.m01469 cryptochrome 1 apoprotein (CRY1) /
           flavin-type blue-light photoreceptor (HY4) contains Pfam
           PF03441: FAD binding domain of DNA photolyase; member of
           Pfam PF00875: deoxyribodipyrimidine photolyase
           superfamily; 99% identical to Cryptochrome 1 apoprotein
           (Blue light photoreceptor) (flavin-type blue-light
           photoreceptor) (SP:Q43125) [Arabidopsis thaliana]
          Length = 681

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 424 DSNVEPDGYSFAYETSDGTSRQEEGKLDNPQSENAALTVTGQY 296
           D+++E D   + Y T      +E  ++DNPQ E       G+Y
Sbjct: 390 DADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEY 432


>At1g17340.1 68414.m02113 phosphoinositide phosphatase family
           protein contains similarity to phosphoinositide
           phosphatase SAC1 [Rattus norvegicus]
           gi|11095248|gb|AAG29810; contains Pfam domain, PF02383:
           SacI homology domain; identical to cDNA SAC domain
           protein 5 (SAC5)  GI:31415726
          Length = 785

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 74  LISRAIWTXAFIWTFFNKSKCQL 6
           ++  +IWT A I+ FF ++KC +
Sbjct: 210 ILQNSIWTVALIYGFFQQTKCSV 232


>At4g38640.1 68417.m05469 choline transporter-related contains weak
           similarity to CD92 protein [Homo sapiens]
           gi|16945323|emb|CAC82175
          Length = 556

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/67 (20%), Positives = 31/67 (46%)
 Frame = +2

Query: 263 SVVLAVRSYVSILSSNCQSCILGLWVVEFAFFLSGCTITSFVRKAVAIGFHVAVKT*NLN 442
           SV+L ++ Y   +   C    +   +    ++   CT++S    A+ + + + V      
Sbjct: 159 SVLLLLKHYTKQIVYACLPLFVLFPIFFNVYWFVACTLSSSCSDALPLAYRILVLVFVFL 218

Query: 443 ILGILLW 463
           I+GI++W
Sbjct: 219 IIGIIVW 225


>At3g04760.1 68416.m00512 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 602

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 239 VGSRCESDSVVLAVRSYVSILSSNCQSCILGLWVVEFAFFLSG 367
           +GS C    + LA++    +LS NCQ  ++   ++  A  L G
Sbjct: 200 IGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEG 242


>At1g69990.1 68414.m08055 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor-like protein kinase
           GI:8777368 from [Arabidopsis thaliana]
          Length = 591

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -1

Query: 352 GKLDNPQSENAALTVTGQYAYVAPDGKHYTVTFTAGPNG--FQPXTSLGQKXKPQKPVYI 179
           GKL + Q    +    G++ YVAP+   Y+ T  A  +G  +     L +    QKPV I
Sbjct: 438 GKLVSSQDSKDSSFSNGKFGYVAPE---YSSTMVASLSGDVYGFGIVLLEIVTGQKPVLI 494

Query: 178 NN 173
           NN
Sbjct: 495 NN 496


>At5g47690.1 68418.m05887 expressed protein
          Length = 1638

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = -1

Query: 448  QDVQILRFDSNVEPDGYSFAYETSDGTSRQEEGKLDNPQSENA 320
            +D+Q  + +S+ + +G    ++ SD   +QE  +++    ENA
Sbjct: 1585 EDLQEAKTESSGDAEGKEAEHDDSDTEGKQENNEMEREAEENA 1627


>At4g21380.1 68417.m03089 S-locus protein kinase, putative (ARK3)
           identical to PIR|T05180|T05180 S-receptor kinase ARK3
           precursor - [Arabidopsis thaliana]
          Length = 850

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 472 SGAPQQNPQDVQILRFDSNVEPDGYSFAYETSDGTSR 362
           SG P+  P +  +  F ++ E   YSF    SD  SR
Sbjct: 228 SGVPEMQPFEYMVFNFTTSKEEVTYSFRITKSDVYSR 264


>At3g04130.1 68416.m00437 pentatricopeptide (PPR) repeat-containing
           protein
          Length = 508

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 446 LGILLWST*AKGYQHASDCH 505
           LGIL W+   KG++H+SD +
Sbjct: 105 LGILKWAESCKGHKHSSDAY 124


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,454,207
Number of Sequences: 28952
Number of extensions: 250144
Number of successful extensions: 634
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)