Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B16
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   6.1  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   6.1  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    25   8.1  
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    25   8.1  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   8.1  

>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
 Frame = +1

Query: 4   SFHFLSFQPHLXLFNFLITVHLSQXICFKHTKI-------*LHIINTLKYHKVILLAESS 162
           SF  +SF+    LF+F +++H    ICF    I        L + N L Y + + L +S 
Sbjct: 390 SFEDISFKLKFLLFSFRLSIH-DNSICFPFNLIQELSSLQQLFVENALPYSEALHLLDSI 448

Query: 163 FPSVRALDS*T 195
             S R  +  T
Sbjct: 449 ERSFRLFNDST 459


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 569 QEVLTQQCSWEAERPVKPILRKLFEGKKLVCCETAWNDF 453
           Q  L+Q   + AE  +  IL K+FE  K +  +T   DF
Sbjct: 211 QSRLSQVLRYSAELSMTSILEKIFERLKYIDVKTDSEDF 249


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 222 KSSPDEAFVCRDCKRFDSMTKIEYNLGSYSNV 317
           K+ PD+A+ C +CK      +++      SNV
Sbjct: 297 KNLPDDAWYCNECKHHSLYNELDEQEELESNV 328


>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 545 SWEAERPVKPILRKLFEGKKLV 480
           SWEA+R  K      F+GKK+V
Sbjct: 365 SWEAKRKQKMPSSAAFQGKKIV 386


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 407 FFSFPLVLLMFQVFFQSHSMLSHSRL 484
           F S  LV  ++ ++F  H +  HSRL
Sbjct: 493 FISLSLVATIYVIYFFGHLIRKHSRL 518


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,110,727
Number of Sequences: 5004
Number of extensions: 40336
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)