Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B16
         (583 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0456 - 18072618-18072718,18072837-18073016,18073425-180735...    44   9e-05
08_02_1620 - 28288152-28288353,28288469-28288557,28288634-282888...    28   6.2  
03_01_0137 - 1082786-1082846,1083850-1084142,1084250-1084550,108...    28   6.2  
09_04_0002 - 13567257-13567373,13568049-13568243,13569750-135698...    27   8.2  

>10_08_0456 -
           18072618-18072718,18072837-18073016,18073425-18073513,
           18074381-18074547,18074880-18075800
          Length = 485

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 21/61 (34%), Positives = 34/61 (55%)
 Frame = -3

Query: 551 QCSWEAERPVKPILRKLFEGKKLVCCETAWNDFEKILETLGGPMEKKRTVLLKEMITVYP 372
           Q   E + P+   L    +GKK + CET  ++F++I+   GGP E+ R+  L + + V P
Sbjct: 307 QAHSELQSPILVELGNAVDGKKCIICETVNSEFKEIVTMCGGPEEQTRSSQLLKRLIVVP 366

Query: 371 D 369
           D
Sbjct: 367 D 367


>08_02_1620 - 28288152-28288353,28288469-28288557,28288634-28288828,
            28289082-28289423,28290227-28291672,28292590-28292666,
            28293160-28294509,28295921-28296029,28296896-28297007,
            28297800-28297957
          Length = 1359

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 433  NVSSIFSKSFHAVSQQTSFLPSNNFLSIGFTGLSAS 540
            N+SS  + +  A  QQT+  P +  +++   G+SAS
Sbjct: 1012 NLSSSLTNTGQATHQQTNMAPQSQSIAVNTPGISAS 1047


>03_01_0137 -
           1082786-1082846,1083850-1084142,1084250-1084550,
           1084792-1084862,1085008-1085115,1085205-1085279,
           1085298-1085440,1087848-1088097
          Length = 433

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 448 FSKSFHAVSQQTSFLPSNNFLSIGFTGLSASQE 546
           F  SF+A+   T  L    F+ IG   LSASQE
Sbjct: 124 FMSSFYAIVVATFLLIGIIFVPIGLASLSASQE 156


>09_04_0002 -
           13567257-13567373,13568049-13568243,13569750-13569869,
           13569958-13570028,13570066-13570126,13570170-13570202,
           13570303-13570431,13571958-13572042,13572143-13572252,
           13572534-13572606,13572688-13572810,13573111-13573289,
           13573659-13573736,13573813-13573871,13574122-13574212,
           13574265-13574442,13574553-13575088
          Length = 745

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 106 LHIINTLKYHKVILLAESSFPSVRALDS*TKAAYVTPC*RAALT 237
           L ++  ++   + LL E + P++RALD   K   VT    AALT
Sbjct: 164 LKLLAVIRADLLALLGEENLPALRALDGYLKEKLVTWLSPAALT 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,506,747
Number of Sequences: 37544
Number of extensions: 223689
Number of successful extensions: 540
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)