Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B16
         (583 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21989| Best HMM Match : Spectrin (HMM E-Value=0)                    32   0.30 
SB_1534| Best HMM Match : zf-FPG_IleRS (HMM E-Value=6.2)               29   3.7  

>SB_21989| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 1805

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 542  WEAERPVKPILRKLFEGKKLVCCETAWNDFEKILETLG 429
            WEA R      R+  E ++LV C   WN+F K +E LG
Sbjct: 1477 WEAVRKNAESRRRQAE-ERLVLCREYWNEFRKFVEWLG 1513


>SB_1534| Best HMM Match : zf-FPG_IleRS (HMM E-Value=6.2)
          Length = 76

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -3

Query: 542 WEAERPVKPILRKLFEGKKLVCCETAWNDFEKILETLGGPMEKKR 408
           W   RP + ++R+  E   +  C T W+       T  GP E+ R
Sbjct: 28  WPTWRPSRSVVRRSSE-LSMARCRTVWSHIGDETTTFAGPRERHR 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,060,559
Number of Sequences: 59808
Number of extensions: 272802
Number of successful extensions: 612
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)