Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_B16
(583 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g73380.2 68414.m08494 expressed protein 60 1e-09
At1g73380.1 68414.m08493 expressed protein 60 1e-09
At4g20260.2 68417.m02960 DREPP plasma membrane polypeptide famil... 28 4.0
At4g20260.1 68417.m02959 DREPP plasma membrane polypeptide famil... 28 4.0
At3g13080.4 68416.m01638 ABC transporter family protein almost i... 27 6.9
At3g13080.3 68416.m01637 ABC transporter family protein almost i... 27 6.9
At3g13080.2 68416.m01636 ABC transporter family protein almost i... 27 6.9
At3g13080.1 68416.m01635 ABC transporter family protein almost i... 27 6.9
At3g05790.1 68416.m00650 Lon protease, putative similar to Lon p... 27 6.9
At5g44350.1 68418.m05431 ethylene-responsive nuclear protein -re... 27 9.1
>At1g73380.2 68414.m08494 expressed protein
Length = 434
Score = 59.7 bits (138), Expect = 1e-09
Identities = 36/127 (28%), Positives = 64/127 (50%)
Frame = -3
Query: 551 QCSWEAERPVKPILRKLFEGKKLVCCETAWNDFEKILETLGGPMEKKRTVLLKEMITVYP 372
Q E E+P + + GK+ + C++ +++F++++ GP EK R L + + V
Sbjct: 310 QARSEIEKPGLVKVGTVLSGKRGIVCKSVFSEFKELVSMYAGPNEKLRAEQLLKSLMVVN 369
Query: 371 DDFGGEDDYPRQNLKVRGHVRVRSKIIFNFGHRIKALTVSANEGFVRAALQQGVTYAAFV 192
D+ +L + +++K +F G R A T++AN FVRA Q G++ +
Sbjct: 370 DN----PSERVMSLPTTRKLAMKNKTVFGTGDRWGAPTLTANMAFVRAVAQSGMSLSTID 425
Query: 191 HESRALT 171
H RALT
Sbjct: 426 HSPRALT 432
>At1g73380.1 68414.m08493 expressed protein
Length = 434
Score = 59.7 bits (138), Expect = 1e-09
Identities = 36/127 (28%), Positives = 64/127 (50%)
Frame = -3
Query: 551 QCSWEAERPVKPILRKLFEGKKLVCCETAWNDFEKILETLGGPMEKKRTVLLKEMITVYP 372
Q E E+P + + GK+ + C++ +++F++++ GP EK R L + + V
Sbjct: 310 QARSEIEKPGLVKVGTVLSGKRGIVCKSVFSEFKELVSMYAGPNEKLRAEQLLKSLMVVN 369
Query: 371 DDFGGEDDYPRQNLKVRGHVRVRSKIIFNFGHRIKALTVSANEGFVRAALQQGVTYAAFV 192
D+ +L + +++K +F G R A T++AN FVRA Q G++ +
Sbjct: 370 DN----PSERVMSLPTTRKLAMKNKTVFGTGDRWGAPTLTANMAFVRAVAQSGMSLSTID 425
Query: 191 HESRALT 171
H RALT
Sbjct: 426 HSPRALT 432
>At4g20260.2 68417.m02960 DREPP plasma membrane polypeptide family
protein contains Pfam profile: PF05558 DREPP plasma
membrane polypeptide
Length = 225
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = -3
Query: 524 VKPILRKLFE---GKKLVCCETAWNDFEKILETLGGPMEKKRTVLLKEMITVY 375
V P +KLFE KK E A F++ ET+ +E+K+T L +++ Y
Sbjct: 8 VVPKFKKLFEKNSAKKAAAAE-ATKTFDESKETINKEIEEKKTELQPKVVETY 59
>At4g20260.1 68417.m02959 DREPP plasma membrane polypeptide family
protein contains Pfam profile: PF05558 DREPP plasma
membrane polypeptide
Length = 225
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = -3
Query: 524 VKPILRKLFE---GKKLVCCETAWNDFEKILETLGGPMEKKRTVLLKEMITVY 375
V P +KLFE KK E A F++ ET+ +E+K+T L +++ Y
Sbjct: 8 VVPKFKKLFEKNSAKKAAAAE-ATKTFDESKETINKEIEEKKTELQPKVVETY 59
>At3g13080.4 68416.m01638 ABC transporter family protein almost
identical to MRP-like ABC transporter GI:2316016 from
[Arabidopsis thaliana]; contains Pfam profile: PF00005
ABC transporter
Length = 1120
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = -3
Query: 566 EVLTQQCSWE--AERP-VKPILRKLFEGKKLVCCETAWNDFEKILETLGGPMEK 414
EV+ SW+ + P +K I K+F G K+ C T + +L +L G + K
Sbjct: 641 EVINSTLSWDVSSSNPTLKDINFKVFPGMKVAVCGTVGSGKSSLLSSLLGEVPK 694
>At3g13080.3 68416.m01637 ABC transporter family protein almost
identical to MRP-like ABC transporter GI:2316016 from
[Arabidopsis thaliana]; contains Pfam profile: PF00005
ABC transporter
Length = 1120
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = -3
Query: 566 EVLTQQCSWE--AERP-VKPILRKLFEGKKLVCCETAWNDFEKILETLGGPMEK 414
EV+ SW+ + P +K I K+F G K+ C T + +L +L G + K
Sbjct: 641 EVINSTLSWDVSSSNPTLKDINFKVFPGMKVAVCGTVGSGKSSLLSSLLGEVPK 694
>At3g13080.2 68416.m01636 ABC transporter family protein almost
identical to MRP-like ABC transporter GI:2316016 from
[Arabidopsis thaliana]; contains Pfam profile: PF00005
ABC transporter
Length = 1489
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = -3
Query: 566 EVLTQQCSWE--AERP-VKPILRKLFEGKKLVCCETAWNDFEKILETLGGPMEK 414
EV+ SW+ + P +K I K+F G K+ C T + +L +L G + K
Sbjct: 641 EVINSTLSWDVSSSNPTLKDINFKVFPGMKVAVCGTVGSGKSSLLSSLLGEVPK 694
>At3g13080.1 68416.m01635 ABC transporter family protein almost
identical to MRP-like ABC transporter GI:2316016 from
[Arabidopsis thaliana]; contains Pfam profile: PF00005
ABC transporter
Length = 1514
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = -3
Query: 566 EVLTQQCSWE--AERP-VKPILRKLFEGKKLVCCETAWNDFEKILETLGGPMEK 414
EV+ SW+ + P +K I K+F G K+ C T + +L +L G + K
Sbjct: 641 EVINSTLSWDVSSSNPTLKDINFKVFPGMKVAVCGTVGSGKSSLLSSLLGEVPK 694
>At3g05790.1 68416.m00650 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 942
Score = 27.5 bits (58), Expect = 6.9
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Frame = -3
Query: 458 DFEKILETLGGPMEKK-----RTVLLKEMITVYPDDFGGE-DDYPRQNLKVRGHV-RVRS 300
+ KI E++ +E+K R ++LKE I + GGE D + K RG + ++
Sbjct: 302 EINKIQESIAKAVEEKFSGDRRRIILKEQINAIKKELGGETDSKSALSEKFRGRIDPIKD 361
Query: 299 KIIFNFGHRIKAL 261
KI GH +K +
Sbjct: 362 KIP---GHVLKVI 371
>At5g44350.1 68418.m05431 ethylene-responsive nuclear protein
-related contains weak similarity to ethylene-regulated
nuclear protein ERT2 [Arabidopsis thaliana]
gi|2765442|emb|CAA75349
Length = 334
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +3
Query: 219 LKSSPDEAFVCRDCKRFDSMTKIEYNLGSYSNVASNFKILPRIIILTSKVIRINC 383
LK SP + F +R + + N S SN + F+ RI + SKV ++NC
Sbjct: 46 LKKSPSKRF-----QRIERQIRTAPNASSLSNQDTIFEKPSRIKTVRSKVEKVNC 95
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,742,432
Number of Sequences: 28952
Number of extensions: 202757
Number of successful extensions: 519
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -