Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B13
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32...    60   2e-09
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30...    48   6e-06
06_03_1127 - 27807784-27807963,27808362-27808460,27809076-278091...    32   0.53 
01_06_1696 + 39256171-39256393,39256513-39256595,39256692-392568...    30   2.1  
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804...    29   3.7  

>12_01_0039 -
           319871-319914,320021-320084,320198-320263,320397-320458,
           321211-321298,321401-321461,321542-321625,322332-322630
          Length = 255

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 36/138 (26%), Positives = 71/138 (51%)
 Frame = -3

Query: 688 SYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKG 509
           SY Y    +YF+      +GFAK F++ SD+  +    L+K+   RGG++   S  T   
Sbjct: 106 SYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNMRGGRVRLQSIVTPLT 165

Query: 508 DKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVS 329
           +       E G  + A+  AL  +K + E++  +H   ++     +D ++T ++E EF+ 
Sbjct: 166 EFDH---PEKGDALYAMELALALEKLVNEKLHNLHSVASR----CNDPQLTDFVESEFLE 218

Query: 328 QQADTIRSLAGHTSDLKR 275
           +Q + I+ ++ + + L+R
Sbjct: 219 EQVEAIKKISEYVAQLRR 236


>11_01_0040 -
           304439-304482,304589-304652,304766-304831,305509-305640,
           305744-305804,305885-306018,306310-306654
          Length = 281

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 38/146 (26%), Positives = 65/146 (44%)
 Frame = -3

Query: 712 LASXYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDF 533
           L S     SY Y    +YF+      +GFAK F++ SD+  +    LIK+   RGG++  
Sbjct: 130 LCSVEYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRL 189

Query: 532 SSHTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQ 353
            S  T           E  H       AL  +   A  I+  +  V       +D ++T 
Sbjct: 190 QSIVT--------PLTEFDHP--EKGDALYGELLSACPIYVFYSMVASR---CNDPQLTD 236

Query: 352 YIEEEFVSQQADTIRSLAGHTSDLKR 275
           ++E EF+ +Q + I+ ++ + + L+R
Sbjct: 237 FVESEFLEEQVEAIKKISEYVAQLRR 262


>06_03_1127 -
           27807784-27807963,27808362-27808460,27809076-27809165,
           27809272-27809404,27809539-27809624,27810028-27810099,
           27810329-27810415,27810485-27810616,27810718-27810789,
           27810957-27811037,27811871-27811963,27812298-27812465
          Length = 430

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -3

Query: 358 TQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGKDLSLAVYLFDEYL 212
           T Y     +S     +  LAGHT+D+     E  G++L LA  L D+ L
Sbjct: 272 TYYKTASLISNSCKAVAILAGHTADVSMLAYE-YGRNLGLAFQLIDDVL 319


>01_06_1696 +
           39256171-39256393,39256513-39256595,39256692-39256831,
           39256882-39257398,39257518-39257565,39257832-39258006,
           39258122-39258234,39258329-39258425,39258579-39258798,
           39258985-39259144,39259233-39259646
          Length = 729

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +2

Query: 254 PVVLGYEPLEVRGVTREATNRIG-LLTHEFLLDVLSDLSIVEEVAVFSDFPVDEENPLGK 430
           P  LG +P     V +   + +G ++       VL  L  +    V SD+ ++E+NPLG 
Sbjct: 453 PAALGLDPTVANSVHQVINSSLGSVIPRNLQKSVLEGLFSIGRAQV-SDYILNEKNPLGS 511

Query: 431 LLL 439
           L L
Sbjct: 512 LRL 514


>01_01_1018 -
           8046819-8046876,8046995-8047212,8048099-8048177,
           8048455-8048540,8048698-8048983,8049063-8049205,
           8049308-8049508,8049626-8049754,8050463-8050738,
           8050823-8051098,8051364-8052364,8052452-8052634,
           8052865-8052937,8053205-8053313,8053622-8053785
          Length = 1093

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -3

Query: 394 TKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENN 257
           T N DL H A+I  YI  E    +   ++   GHTSD + F  E +
Sbjct: 269 TGNRDLYH-AQIHPYINGEHKRDRCIQMKEKLGHTSDHEGFSREKS 313


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,909,957
Number of Sequences: 37544
Number of extensions: 323412
Number of successful extensions: 739
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)