Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_B13
(720 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 8e-11
SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 2e-08
SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 9e-05
SB_46661| Best HMM Match : Ferritin (HMM E-Value=0.18) 44 2e-04
SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8) 35 0.058
SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012) 33 0.31
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05) 32 0.41
SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032) 32 0.54
SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54) 32 0.54
SB_6832| Best HMM Match : HLH (HMM E-Value=2.4e-14) 30 1.6
SB_4417| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 29 5.0
SB_12078| Best HMM Match : Ubie_methyltran (HMM E-Value=0.17) 28 6.6
SB_35963| Best HMM Match : Cadherin (HMM E-Value=0) 28 8.8
SB_34907| Best HMM Match : Cadherin (HMM E-Value=0) 28 8.8
SB_5548| Best HMM Match : PT (HMM E-Value=3.1) 28 8.8
>SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 64.5 bits (150), Expect = 8e-11
Identities = 43/141 (30%), Positives = 71/141 (50%)
Frame = -3
Query: 697 LKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTT 518
L SY YL A +F+ GF K F K S + E L+K +RGG++
Sbjct: 211 LYASYAYLSMAFHFDRDDVALPGFHKYFLKASHEEREHAEKLMKFQNERGGRIVLQDIKK 270
Query: 517 LKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEE 338
+ D E G + ++ ALD +K + + + +H+ K+ D A++T +IE
Sbjct: 271 PEKD-------EWGCGMDSIQVALDLEKHVNQALLDLHKIAEKHGD----AQMTDFIEGN 319
Query: 337 FVSQQADTIRSLAGHTSDLKR 275
F+++Q + I+ LAGH ++LKR
Sbjct: 320 FLTEQVEAIKELAGHLTNLKR 340
Score = 51.2 bits (117), Expect = 8e-07
Identities = 31/131 (23%), Positives = 66/131 (50%)
Frame = -3
Query: 667 ASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGSNYT 488
A++F + GFA F+K +++ + ++ + KRGG++ H +K +
Sbjct: 1 AAHFGRDDIHLPGFAAFFKKAAEEEYTHAHMFMEFLNKRGGRVKL--HHIMKPCRD---- 54
Query: 487 VEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIR 308
G+ + A+ AL +K++ + +H+ N D ++ ++E F+ +Q D+I+
Sbjct: 55 -HWGNGLMAMRDALYLEKEINHALLDLHQVADTN----RDPQVQDFLESNFLGEQVDSIK 109
Query: 307 SLAGHTSDLKR 275
+LA + S L+R
Sbjct: 110 TLANYVSTLQR 120
>SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 56.8 bits (131), Expect = 2e-08
Identities = 38/141 (26%), Positives = 70/141 (49%)
Frame = -3
Query: 697 LKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTT 518
L SY Y+ A +F+ GF K F K S + E L K +RGG++
Sbjct: 143 LYASYVYMSMAYHFDRDDVALPGFHKYFMKASHEEREHAEKLAKFQLQRGGRIVLQD--- 199
Query: 517 LKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEE 338
+K + ++ G A+ ALD +K + + + +H+ K+ D +++ ++E
Sbjct: 200 IKRPERDDW----GCGQDAIQAALDLEKHVNQALLDLHKVAEKHGD----SQMQDWLESH 251
Query: 337 FVSQQADTIRSLAGHTSDLKR 275
++++Q + I+ LAGH ++LKR
Sbjct: 252 YLTEQVEAIKELAGHLTNLKR 272
>SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 54.0 bits (124), Expect = 1e-07
Identities = 36/141 (25%), Positives = 71/141 (50%)
Frame = -3
Query: 697 LKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTT 518
L SY Y+ A +F+ GF K F + S + E L K +RGG++
Sbjct: 158 LYASYVYMSMAFHFDRDDVALPGFHKYFMEASHEEREHAEKLAKFQLQRGGRIVLQD--- 214
Query: 517 LKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEE 338
+K + ++ G ++ + ALD +K + + + +H+ K+ D +++ ++E
Sbjct: 215 IKRPERDDWGC--GQDV--IQAALDLEKHVNQALHDLHKVAEKHGD----SQMQDWLESH 266
Query: 337 FVSQQADTIRSLAGHTSDLKR 275
++++Q + I+ LAGH ++LKR
Sbjct: 267 YLTEQVEAIKELAGHMTNLKR 287
>SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 44.4 bits (100), Expect = 9e-05
Identities = 21/70 (30%), Positives = 43/70 (61%)
Frame = -3
Query: 484 EVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIRS 305
E G + A+ ALD +K + + + + + KN D A+++ +IE+ F+++Q ++IR
Sbjct: 70 EWGSGLEAMQTALDLEKHVNQALIELEKTAEKNGD----AQMSDFIEDHFLTEQVESIRE 125
Query: 304 LAGHTSDLKR 275
L+G+ + LK+
Sbjct: 126 LSGYIAVLKK 135
>SB_46661| Best HMM Match : Ferritin (HMM E-Value=0.18)
Length = 88
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/76 (28%), Positives = 45/76 (59%)
Frame = -3
Query: 478 GHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLA 299
G+ + A+ AL +K++ + +HR+ + +D A++ +IEE F+++Q D+I+ L+
Sbjct: 8 GNGLMAMEDALALEKEILSSLQALHRKAQEEND----AQMQDFIEETFLNEQMDSIKQLS 63
Query: 298 GHTSDLKRFITENNGK 251
+ S L+R E G+
Sbjct: 64 NYVSTLRRLGGEGLGE 79
>SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)
Length = 360
Score = 35.1 bits (77), Expect = 0.058
Identities = 23/68 (33%), Positives = 38/68 (55%)
Frame = -1
Query: 444 TRRSSLPRGFSSSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSSGS*P 265
++++SL +S SLK + ++ SL TSR+ K R + + +P+TSS S P
Sbjct: 105 SQKTSLNASRKTSRKTSLKRSLKTSPKTSLKTSRKTD--RKKSRNTSPKRSPKTSSKSSP 162
Query: 264 RTTGKTCL 241
+T+ KT L
Sbjct: 163 KTSPKTSL 170
Score = 34.3 bits (75), Expect = 0.10
Identities = 22/69 (31%), Positives = 38/69 (55%)
Frame = -1
Query: 444 TRRSSLPRGFSSSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSSGS*P 265
+R++SL R +S SLKT+ + +S NTS + S K + + +P+TS +
Sbjct: 117 SRKTSLKRSLKTSPKTSLKTSRKTDRKKSRNTSPKRS--PKTSSKSSPKTSPKTSLKTSS 174
Query: 264 RTTGKTCLS 238
+T+ KT L+
Sbjct: 175 KTSPKTSLN 183
>SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)
Length = 126
Score = 32.7 bits (71), Expect = 0.31
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 685 YHYLLSASYFNNYQTNREGFAKLFRKLSDDSWE 587
Y YL A +F+ N GF K F+K S + WE
Sbjct: 50 YTYLSMAFHFDRDDINLPGFNKFFKKASKEEWE 82
>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
Length = 3397
Score = 32.3 bits (70), Expect = 0.41
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Frame = -3
Query: 403 REVTKNSDLLHDAEITQYIE--------EEFVSQQADTIRSLAGHTSDLKRFITENNG 254
+EVT N+ L D +TQ E EE+V + IR + T +KR+IT++NG
Sbjct: 182 QEVT-NAVTLQDQPVTQSFEPTSEEEKVEEYVDEYGHVIRCITRRTLVIKRYITDDNG 238
>SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)
Length = 521
Score = 31.9 bits (69), Expect = 0.54
Identities = 22/69 (31%), Positives = 36/69 (52%)
Frame = -1
Query: 444 TRRSSLPRGFSSSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSSGS*P 265
+R++S S S KT+ + ++SL TS + S P R +P+TSS + P
Sbjct: 333 SRKTSRKTSLKRSLKTSPKTSPKTMRMKSLKTSPKTSPEISP------RTSPKTSSKTSP 386
Query: 264 RTTGKTCLS 238
+T+ KT L+
Sbjct: 387 KTSLKTSLN 395
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = -1
Query: 438 RSSLPRGFSSSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPR--TSSGS*P 265
++SL +S SLKT+ ++M SL TSRR S + P + + + R TS + P
Sbjct: 154 KTSLKTSLKASLKTSLKTSLKTSMKTSLKTSRRTSLKTCPKTSLETSMKTRLNTSQKTSP 213
Query: 264 RTT 256
T+
Sbjct: 214 ETS 216
>SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54)
Length = 240
Score = 31.9 bits (69), Expect = 0.54
Identities = 22/66 (33%), Positives = 34/66 (51%)
Frame = -1
Query: 444 TRRSSLPRGFSSSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSSGS*P 265
+RR+SL R +S S KT ++ S TS + P +S+ +P+TS S P
Sbjct: 89 SRRTSLKRSLKTSPKTSPKTMRMKSLKTSPKTSPEIGPRTSPK--TSSKTSPKTSPKSSP 146
Query: 264 RTTGKT 247
+T+ KT
Sbjct: 147 KTSPKT 152
>SB_6832| Best HMM Match : HLH (HMM E-Value=2.4e-14)
Length = 189
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 356 SDLSIVEEVAVFSDFPVDEENPLGKLLLRVQ 448
SDL +E FSDF ++E LGKL LR++
Sbjct: 137 SDLDDLETDFTFSDFSLEEFPELGKLALRIK 167
>SB_4417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 886
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = -3
Query: 484 EVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIRS 305
E+G ++ L+KAL +++LA +I + E T NS ++ E T E +S+ +
Sbjct: 458 ELGRQVQELSKALSLKQELANKI--MQNEGTMNSKMIKQYEDTVRELETEISKLEEEKAK 515
Query: 304 LAGHTSDLKRFI-TENNGK 251
LA + K + ++++GK
Sbjct: 516 LATALATAKTAVHSDSDGK 534
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = -1
Query: 453 KPWTRRSSLPRGFSSSTGKSLKTATSSTMLRSLNTSRRNS 334
KP R+SS SSS+G S +++SST S +SR +S
Sbjct: 1005 KPARRQSSSSSSSSSSSGSSSYSSSSSTGSSSSGSSRSSS 1044
>SB_12078| Best HMM Match : Ubie_methyltran (HMM E-Value=0.17)
Length = 237
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 601 DDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGD 506
+DS ++ +G +K V K GG+ F H K D
Sbjct: 160 EDSLDQLLGEVKRVLKPGGRFYFIEHIADKSD 191
>SB_35963| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 864
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -3
Query: 475 HEIGALAKALDTQKQLAERIFFIHRE---VTKNSDLLHDAEITQYI 347
+EI + +ALDT Q A R+F I + VTKN + D E Y+
Sbjct: 58 NEIYSFFRALDTASQSALRLFDISEDGVVVTKNPLVYTDGEENLYV 103
>SB_34907| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 697
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -3
Query: 475 HEIGALAKALDTQKQLAERIFFIHRE---VTKNSDLLHDAEITQYI 347
+EI + +ALDT Q A R+F I + VTKN + D E Y+
Sbjct: 54 NEIYSFFRALDTASQSALRLFDISEDGVVVTKNPLVYTDGEENLYV 99
>SB_5548| Best HMM Match : PT (HMM E-Value=3.1)
Length = 157
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = -1
Query: 411 SSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSSGS*PRTTGKT 247
+S S KT+ + ++SL T+ + S K R + +P+TS + P+T+ KT
Sbjct: 5 TSPKTSPKTSQKTMRIKSLKTTPKTS--PKTRRKTGRKTSPKTSPKTSPKTSPKT 57
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,678,953
Number of Sequences: 59808
Number of extensions: 370826
Number of successful extensions: 862
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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