Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_B11
(306 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191 69 7e-13
03_05_0610 - 26108546-26108671,26108739-26108789,26109410-261095... 67 2e-12
02_05_1349 + 35841694-35843738,35844506-35844624,35844932-358450... 31 0.24
06_01_1174 - 10025086-10027217,10027271-10027333,10027704-10027866 27 2.2
11_06_0129 - 20397179-20397537,20397749-20400497 26 6.7
05_07_0144 - 28007477-28008412 26 6.7
06_02_0322 + 14369221-14369540,14370240-14370918,14371347-143715... 25 8.9
04_03_0142 + 11773124-11774158 25 8.9
03_01_0273 - 2107778-2108772,2108857-2109043,2109121-2110575,211... 25 8.9
02_05_1007 + 33452774-33452993,33453028-33453122,33453208-334533... 25 8.9
>03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191
Length = 82
Score = 68.9 bits (161), Expect = 7e-13
Identities = 36/75 (48%), Positives = 45/75 (60%)
Frame = -3
Query: 256 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTXKMYVVCGAIR 77
MQN+ G+ VDLY PRKCSA+NR+I AKDHASVQ+ I VD G + + G IR
Sbjct: 1 MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFIR 59
Query: 76 RMGEXDDCSVRXTKK 32
G+ D R +K
Sbjct: 60 AQGDADSALDRLWQK 74
>03_05_0610 -
26108546-26108671,26108739-26108789,26109410-26109542,
26109633-26109682
Length = 119
Score = 67.3 bits (157), Expect = 2e-12
Identities = 35/75 (46%), Positives = 44/75 (58%)
Frame = -3
Query: 256 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTXKMYVVCGAIR 77
MQN+ G+ VDLY PRKCS +NR+I AKDHASVQ+ I VD G + + G IR
Sbjct: 1 MQNEEGQMVDLYVPRKCSTTNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFIR 59
Query: 76 RMGEXDDCSVRXTKK 32
G+ D R +K
Sbjct: 60 AQGDADSALDRLWQK 74
>02_05_1349 +
35841694-35843738,35844506-35844624,35844932-35845075,
35845189-35845310,35845474-35845609,35845861-35845957,
35846727-35846899,35847099-35847262,35847466-35847537,
35847833-35847928,35847999-35848124
Length = 1097
Score = 30.7 bits (66), Expect = 0.24
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = -1
Query: 264 HIKCRTTPVNSLTCTARGNARPATASST 181
H++CR+TP +SLT N PA++SS+
Sbjct: 81 HLRCRSTPRDSLTYNTLLNHLPASSSSS 108
>06_01_1174 - 10025086-10027217,10027271-10027333,10027704-10027866
Length = 785
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 277 PCGRTYKMQNDAGEFVDLY-CPRKCSASNRLI 185
P G+ + Q D G ++L CP +CS + +L+
Sbjct: 255 PTGKDIQQQRDRGGPIELLVCPSRCSRTKQLV 286
>11_06_0129 - 20397179-20397537,20397749-20400497
Length = 1035
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 132 AGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFC 254
AGS+S+ + + +L + +L+ LG S NS + FC
Sbjct: 20 AGSSSSSNATADELALLSFKSMLSSPSLGLMASWNSSSHFC 60
>05_07_0144 - 28007477-28008412
Length = 311
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +3
Query: 57 SSXSP---ILRIAPQTTYILXVSAARPVAGSTSAITSCTE 167
SS SP ++APQTT I ++A V STSA + E
Sbjct: 43 SSVSPGDAAAQLAPQTTTITTSNSAAAVGNSTSASGTTAE 82
>06_02_0322 +
14369221-14369540,14370240-14370918,14371347-14371573,
14372121-14372312,14372394-14372550,14373860-14374093
Length = 602
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 226 LYCPRKCSASNRLIHAKDHASVQLVIADVDPA 131
+ C R +ASN K HAS ++DVD A
Sbjct: 158 ILCVRSGTASNPADSGKVHASHGFYVSDVDAA 189
>04_03_0142 + 11773124-11774158
Length = 344
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 102 ILXVSAARPVAGSTSAITSCTEAWSLAWM 188
++ + AA P+A ++SA+ T A+ LAW+
Sbjct: 42 VVALLAAAPLAFTSSAMLRGTSAFFLAWL 70
>03_01_0273 -
2107778-2108772,2108857-2109043,2109121-2110575,
2110670-2111251
Length = 1072
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 190 GGCWPSISSGSTSQRIHRRRSAFYMYVHTVHGIDRSI 300
GG P S+ +QR++ R + + + VH +D+S+
Sbjct: 796 GGQNPRPSTSRGTQRLYVRLNTLHFILSHVHALDKSL 832
>02_05_1007 +
33452774-33452993,33453028-33453122,33453208-33453329,
33453392-33453694,33454657-33454918,33455039-33455140,
33455931-33457151,33457250-33457342
Length = 805
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 262 YKMQNDAGEFVDLYCPRKCSASNRLIHAKD 173
YK +D + DL+ P +C + + IH KD
Sbjct: 82 YKQPSDP-QMKDLFLPFRCFCTRKDIHCKD 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,825,678
Number of Sequences: 37544
Number of extensions: 159046
Number of successful extensions: 468
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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