Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B11
         (306 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28407| Best HMM Match : SAM_PNT (HMM E-Value=3.4e-13)               32   0.11 
SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.7  
SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               26   5.3  
SB_31464| Best HMM Match : Lyase_1 (HMM E-Value=2.2e-32)               26   5.3  
SB_43579| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.3  
SB_7130| Best HMM Match : Toxin_18 (HMM E-Value=5.7)                   26   5.3  
SB_10821| Best HMM Match : TFIIB (HMM E-Value=0.35)                    26   7.0  
SB_52307| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)              26   7.0  
SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.2  
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.2  
SB_49202| Best HMM Match : Herpes_UL1 (HMM E-Value=3.2)                25   9.2  
SB_22144| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.2  
SB_20498| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.2  
SB_1333| Best HMM Match : IncA (HMM E-Value=0.32)                      25   9.2  

>SB_28407| Best HMM Match : SAM_PNT (HMM E-Value=3.4e-13)
          Length = 233

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +2

Query: 32  FLCXPHAAIIXLSHPSDRPTD 94
           FLC  HAAI   +HPS RP D
Sbjct: 69  FLCHTHAAITGKAHPSGRPPD 89


>SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2353

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 193 GCWPSISSGSTSQRIHRRRSAFYMYVHT 276
           G W +  + S   R+H+RR+A ++Y  T
Sbjct: 337 GIWHTRRTSSRGIRLHKRRNAMFVYAKT 364


>SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 275

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -3

Query: 157 LVIADVDPATGRAADTXKMYVVCGAI 80
           L++AD+ P T        +Y++C  I
Sbjct: 249 LIVADILPPTSEVVPVISIYIICSTI 274


>SB_31464| Best HMM Match : Lyase_1 (HMM E-Value=2.2e-32)
          Length = 306

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = +2

Query: 44  PHAAIIXLSHPSDRPTDNIHFXCVSSTTCGGVYVSNH*LY*SMVLSVDEAVAGRAFPRAV 223
           P A +  +  P++ P  +I    V+ T C  + +         VL  D  +A  A    +
Sbjct: 155 PRAGLAEVRLPANEPGSSIMPGKVNPTQCEALSMLA-----CQVLGNDTTIAFAASQGHL 209

Query: 224 QVNEFTGVVLHFICTSTR 277
           Q+N F  V++H +  S R
Sbjct: 210 QLNVFKPVIIHNLLQSVR 227


>SB_43579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 193 RLIHAKDHASVQLVIADVDPATGR 122
           R+ H  +HA  Q++ A +DP TG+
Sbjct: 44  RVHHGINHAKSQILTAKLDPLTGK 67


>SB_7130| Best HMM Match : Toxin_18 (HMM E-Value=5.7)
          Length = 441

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/60 (20%), Positives = 24/60 (40%)
 Frame = -3

Query: 304 NELICQFRVPCGRTYKMQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATG 125
           +++   F  P   T+   +   EF+     +KC  SN +     +   +  + +  PA G
Sbjct: 199 DDIFLNFTDPSQVTFNRSSFLNEFLRKMVQKKCQVSNEISSGNSYRDFEKFLLEYLPAVG 258


>SB_10821| Best HMM Match : TFIIB (HMM E-Value=0.35)
          Length = 473

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 276 RVDVHIKCRTTPVNSLTCTARGNARPATAS-STLRT 172
           +V VHIK RT P  S   T + NAR ++   S L+T
Sbjct: 6   QVTVHIKKRTEPQESDQKTKKNNARGSSRGYSGLKT 41


>SB_52307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 668

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +3

Query: 9   SFFASLPSFFVXLTLQSSXSPILRIAPQTTYILXVSAARPVAGSTSAI 152
           SFF+     F    +QSS  P    + QT+  L V   RPV   TS +
Sbjct: 223 SFFSKEQYVFA---VQSSAVPAANFSLQTSSYLAVCKERPVPSMTSVL 267


>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
          Length = 3094

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 45  LTLQSSXSPILRIAPQTTYILXVSAA 122
           +T +++ +P   +AP+TT +L  SAA
Sbjct: 7   VTAETTAAPETTVAPETTAVLETSAA 32


>SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1429

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 44  PHAAIIXLSHPSDRPTDNIHFXCVSS 121
           PH  +  L HP DR T+ I   C+ S
Sbjct: 862 PHCRVSTLPHPRDRHTNEI-IHCLKS 886


>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = +3

Query: 27  PSFFVXLTLQSSXSPILRIAPQTTYILXVSAARPVAGSTSAIT 155
           P   V ++ Q   +P + +AP+TT +   + A      T   T
Sbjct: 396 PEISVTISTQPKKAPGITVAPETTVVPETTVASETTAETHQTT 438


>SB_49202| Best HMM Match : Herpes_UL1 (HMM E-Value=3.2)
          Length = 304

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 86  PTDNIHFXCVSSTTCGGVY 142
           P+DN++  CV+ T  G V+
Sbjct: 68  PSDNVYMTCVTGTILGRVF 86


>SB_22144| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 253 AFYMYVHTVHGIDRS 297
           AFY+ +HTV G+D+S
Sbjct: 293 AFYLEMHTVAGVDQS 307


>SB_20498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 253 AFYMYVHTVHGIDRS 297
           AFY+ +HTV G+D+S
Sbjct: 54  AFYLEMHTVAGVDQS 68


>SB_1333| Best HMM Match : IncA (HMM E-Value=0.32)
          Length = 302

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -3

Query: 208 CSASNRLIHAKD--HASVQLVIADVDPATG 125
           C A +  +H  D  HA  Q++ A +DP TG
Sbjct: 38  CRAPHGRVHRGDDHHAKSQILTAKLDPLTG 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,055,404
Number of Sequences: 59808
Number of extensions: 176318
Number of successful extensions: 579
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 377252670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)