Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_B11
(306 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00033-12|AAC48297.2| 88|Caenorhabditis elegans Ribosomal prot... 104 1e-23
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr... 30 0.37
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ... 30 0.37
Z73103-3|CAA97423.1| 540|Caenorhabditis elegans Hypothetical pr... 27 3.4
Z49909-3|CAA90107.2| 603|Caenorhabditis elegans Hypothetical pr... 27 3.4
AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein. 27 3.4
AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (droso... 27 3.4
AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (droso... 27 3.4
AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso... 27 3.4
AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso... 27 3.4
AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein. 27 3.4
Z81523-2|CAB04248.1| 928|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z81523-1|CAB04241.1| 944|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z81509-7|CAJ85751.1| 544|Caenorhabditis elegans Hypothetical pr... 26 6.0
U97002-11|AAY86259.1| 121|Caenorhabditis elegans Hypothetical p... 25 7.9
>U00033-12|AAC48297.2| 88|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 21 protein.
Length = 88
Score = 104 bits (250), Expect = 1e-23
Identities = 49/84 (58%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Frame = -3
Query: 256 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGR-AADTXKMYVVCGAI 80
MQNDAG+ V+LY PRKCS+SNR+I KDHASVQ+ DVDP TGR Y +CGAI
Sbjct: 1 MQNDAGQTVELYVPRKCSSSNRIIGPKDHASVQIDFVDVDPETGRMIPGKSTRYAICGAI 60
Query: 79 RRMGEXDDCSVRXTKKDGRLAKND 8
RRMGE DD +R +KDG + ++D
Sbjct: 61 RRMGESDDAILRLAQKDGLVPRDD 84
>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 29.9 bits (64), Expect = 0.37
Identities = 14/63 (22%), Positives = 27/63 (42%)
Frame = +3
Query: 87 PQTTYILXVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYV 266
PQ+ + S GS S C AW W++ E + + + N+ ++ +L
Sbjct: 792 PQSAFSNLTSITHIAVGSNSLYCDCNMAWFSKWIKSKFIEAGIARCEYPNTVSNQLLLTA 851
Query: 267 RPH 275
+P+
Sbjct: 852 QPY 854
>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 29.9 bits (64), Expect = 0.37
Identities = 14/63 (22%), Positives = 27/63 (42%)
Frame = +3
Query: 87 PQTTYILXVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYV 266
PQ+ + S GS S C AW W++ E + + + N+ ++ +L
Sbjct: 792 PQSAFSNLTSITHIAVGSNSLYCDCNMAWFSKWIKSKFIEAGIARCEYPNTVSNQLLLTA 851
Query: 267 RPH 275
+P+
Sbjct: 852 QPY 854
>Z73103-3|CAA97423.1| 540|Caenorhabditis elegans Hypothetical
protein C08F8.4 protein.
Length = 540
Score = 26.6 bits (56), Expect = 3.4
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +3
Query: 171 WSLAWMRRLLAEHFLGQYKS 230
W++AW+RR++ E G Y++
Sbjct: 359 WTVAWLRRVVYERVEGPYRT 378
>Z49909-3|CAA90107.2| 603|Caenorhabditis elegans Hypothetical
protein C14A4.3 protein.
Length = 603
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/50 (22%), Positives = 23/50 (46%)
Frame = -3
Query: 298 LICQFRVPCGRTYKMQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVI 149
++C + RTY + N+ G V++Y +NR H +++ +
Sbjct: 409 ILCFAILSASRTYSIHNNYGSHVEIYRSLNAELTNRTNFKNFHDPIRVCV 458
>AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein.
Length = 4250
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -1
Query: 270 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQY 160
++H+ R TPVN T N RP S ++T+ ++
Sbjct: 839 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEF 877
>AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin
(drosophila actin-binding)homolog protein 1, isoform b
protein.
Length = 4203
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -1
Query: 270 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQY 160
++H+ R TPVN T N RP S ++T+ ++
Sbjct: 756 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEF 794
>AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform a protein.
Length = 4488
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -1
Query: 270 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQY 160
++H+ R TPVN T N RP S ++T+ ++
Sbjct: 1077 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEF 1115
>AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform d protein.
Length = 4369
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -1
Query: 270 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQY 160
++H+ R TPVN T N RP S ++T+ ++
Sbjct: 1077 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEF 1115
>AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform c protein.
Length = 4447
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -1
Query: 270 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQY 160
++H+ R TPVN T N RP S ++T+ ++
Sbjct: 1077 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEF 1115
>AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein.
Length = 4219
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -1
Query: 270 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQY 160
++H+ R TPVN T N RP S ++T+ ++
Sbjct: 756 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEF 794
>Z81523-2|CAB04248.1| 928|Caenorhabditis elegans Hypothetical
protein F32H2.1b protein.
Length = 928
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 267 VHIKCRTTPVNSLTCTARGNARPATASSTLRTMLQ 163
+H+ ++ N + C A+ P AS L MLQ
Sbjct: 695 LHVNSKSCNQNDVHCPAKSTLPPTAASFDLHKMLQ 729
>Z81523-1|CAB04241.1| 944|Caenorhabditis elegans Hypothetical
protein F32H2.1a protein.
Length = 944
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 267 VHIKCRTTPVNSLTCTARGNARPATASSTLRTMLQ 163
+H+ ++ N + C A+ P AS L MLQ
Sbjct: 695 LHVNSKSCNQNDVHCPAKSTLPPTAASFDLHKMLQ 729
>Z81509-7|CAJ85751.1| 544|Caenorhabditis elegans Hypothetical
protein F21A3.2b protein.
Length = 544
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +1
Query: 1 TVHRFSPVSHLSLXTSRCNHXPLPSFGSPHRQH 99
+ H + P++ + S+ N PSFG P + H
Sbjct: 67 STHEYLPINRIPEWKSKINGNIGPSFGQPEQIH 99
>U97002-11|AAY86259.1| 121|Caenorhabditis elegans Hypothetical
protein K09H11.11 protein.
Length = 121
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -2
Query: 203 GQQPPHPR*GPCF 165
GQQPPHP+ P F
Sbjct: 19 GQQPPHPQIDPLF 31
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,253,615
Number of Sequences: 27780
Number of extensions: 125958
Number of successful extensions: 383
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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