Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B11
         (306 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53890.1 68416.m05953 40S ribosomal protein S21 (RPS21B) ribo...    71   1e-13
At5g27700.1 68418.m03322 40S ribosomal protein S21 (RPS21C) ribo...    70   4e-13
At1g48090.1 68414.m05362 C2 domain-containing protein contains P...    27   2.5  
At5g20070.1 68418.m02390 MutT/nudix family protein low similarit...    26   5.7  
At3g18390.1 68416.m02339 expressed protein contains Pfam domain,...    26   5.7  
At1g68020.2 68414.m07771 glycosyl transferase family 20 protein ...    26   5.7  
At1g68020.1 68414.m07770 glycosyl transferase family 20 protein ...    26   5.7  
At2g39620.1 68415.m04857 pentatricopeptide (PPR) repeat-containi...    25   7.6  
At2g06000.2 68415.m00654 pentatricopeptide (PPR) repeat-containi...    25   7.6  
At2g06000.1 68415.m00653 pentatricopeptide (PPR) repeat-containi...    25   7.6  
At1g73000.1 68414.m08442 hypothetical protein                          25   7.6  

>At3g53890.1 68416.m05953 40S ribosomal protein S21 (RPS21B)
           ribosomal protein S21, cytosolic - Oryza sativa,
           PIR:S38357
          Length = 82

 Score = 71.3 bits (167), Expect = 1e-13
 Identities = 33/66 (50%), Positives = 44/66 (66%)
 Frame = -3

Query: 256 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTXKMYVVCGAIR 77
           M+NDAG+  +LY PRKCSA+NR+I +KDHASVQL I  +D A G        + +CG +R
Sbjct: 1   MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLD-ANGLYTGQFTTFALCGFVR 59

Query: 76  RMGEXD 59
             G+ D
Sbjct: 60  AQGDAD 65


>At5g27700.1 68418.m03322 40S ribosomal protein S21 (RPS21C)
           ribosomal protein S21, Zea mays, PIR:T03945
          Length = 85

 Score = 69.7 bits (163), Expect = 4e-13
 Identities = 33/66 (50%), Positives = 43/66 (65%)
 Frame = -3

Query: 256 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTXKMYVVCGAIR 77
           MQN+ G+  +LY PRKCSA+NRLI +KDHASVQL I  +D A G        + +CG +R
Sbjct: 1   MQNEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLD-ANGLYTGQFTTFALCGFVR 59

Query: 76  RMGEXD 59
             G+ D
Sbjct: 60  AQGDAD 65


>At1g48090.1 68414.m05362 C2 domain-containing protein contains Pfam
            profile: PF00168 C2 domain
          Length = 4144

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +3

Query: 156  SCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYV--RPH 275
            +C+  W + W   +  E   G+    NSP S  ILY+  +PH
Sbjct: 4019 ACSIQWDILWNDLVTMELSDGKKDPPNSPPSRLILYLKAKPH 4060


>At5g20070.1 68418.m02390 MutT/nudix family protein low similarity
           to SP|Q19427 NADH pyrophosphatase (EC 3.6.1.-)
           {Caenorhabditis elegans}; contains Pfam profile PF00293:
           NUDIX domain
          Length = 438

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = +3

Query: 6   SSFFASLPSFFVXLTLQSSXSPILRIAPQTTYILXVSAARPVAGSTSAITSCTEAWSLAW 185
           +S F SL +    +   S+ SP  ++ P        S  RP+  S+    + T  W L W
Sbjct: 64  TSAFESLKTLIPVIPNHSTPSPDFKVLP-------FSKGRPLVFSSGGDANTTPIWHLGW 116

Query: 186 M 188
           +
Sbjct: 117 V 117


>At3g18390.1 68416.m02339 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 848

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 244 AGEFVDLYCPRKCSASNRLIHAKDHASVQLVIAD 143
           AG    L+ P   SA +   +AKD+ S  LVI D
Sbjct: 341 AGPKETLFVPDVSSAGDEATNAKDNQSAPLVIKD 374


>At1g68020.2 68414.m07771 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein similar to
           SP|Q00764 Alpha,alpha-trehalose-phosphate synthase
           [UDP-forming] 56 kDa subunit (EC 2.4.1.15)
           (Trehalose-6-phosphate synthase) {Saccharomyces
           cerevisiae}; contains Pfam profile: PF02358
           trehalose-phosphatase
          Length = 860

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +3

Query: 132 AGSTSAITSCTEAWSLAW 185
           +GS+S+ T C++ W+ +W
Sbjct: 75  SGSSSSSTCCSKGWNFSW 92


>At1g68020.1 68414.m07770 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein similar to
           SP|Q00764 Alpha,alpha-trehalose-phosphate synthase
           [UDP-forming] 56 kDa subunit (EC 2.4.1.15)
           (Trehalose-6-phosphate synthase) {Saccharomyces
           cerevisiae}; contains Pfam profile: PF02358
           trehalose-phosphatase
          Length = 700

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +3

Query: 132 AGSTSAITSCTEAWSLAW 185
           +GS+S+ T C++ W+ +W
Sbjct: 75  SGSSSSSTCCSKGWNFSW 92


>At2g39620.1 68415.m04857 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 836

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 199 WPSISSGSTSQRIHRRRSAFYMYVHTVHGID 291
           W S+  G T   +HR    F+ Y+    GID
Sbjct: 67  WNSMIRGYTRAGLHREALGFFGYMSEEKGID 97


>At2g06000.2 68415.m00654 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 536

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 120 ARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCIL 260
           ARP+  +T  +  C E    AW+ ++++  F+  Y+  +S   FC L
Sbjct: 23  ARPLQNNTREVIHCPE----AWLVKIVSTLFV--YRVPDSDLCFCYL 63


>At2g06000.1 68415.m00653 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 536

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 120 ARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCIL 260
           ARP+  +T  +  C E    AW+ ++++  F+  Y+  +S   FC L
Sbjct: 23  ARPLQNNTREVIHCPE----AWLVKIVSTLFV--YRVPDSDLCFCYL 63


>At1g73000.1 68414.m08442 hypothetical protein
          Length = 209

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 19/76 (25%), Positives = 30/76 (39%)
 Frame = +3

Query: 33  FFVXLTLQSSXSPILRIAPQTTYILXVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHF 212
           F    T++ + + I  I   T   + V +  P + S   +    E   +   R L  EH 
Sbjct: 81  FIKSCTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHR 140

Query: 213 LGQYKSTNSPASFCIL 260
           L  Y+S  S   F +L
Sbjct: 141 LNNYRSVTSVNEFVVL 156


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,768,245
Number of Sequences: 28952
Number of extensions: 115658
Number of successful extensions: 283
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 311361520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)