Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B10
         (410 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0117 + 925850-925988,926075-926494,926607-926785,927568-92...    29   1.9  
11_06_0125 - 20356683-20357071,20359531-20362285                       27   5.8  
01_05_0035 + 17440828-17441364                                         27   7.7  

>03_01_0117 +
           925850-925988,926075-926494,926607-926785,927568-927686,
           928180-928498
          Length = 391

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -2

Query: 343 DFGLSSENIMSLSPFFRSPFTDVTGGMISHQLLGRCQKEEA--RYMDCL 203
           +F +  EN++      R P   + GG++  +LLGR QK+EA  RY  C+
Sbjct: 241 EFPMLQENVLQSFKLPR-PVLCI-GGIVKVELLGRVQKQEADDRYYICI 287


>11_06_0125 - 20356683-20357071,20359531-20362285
          Length = 1047

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 308 VAVLSLTVYGCYWWHDFPPTSGSLPE 231
           V++ +L+VY  Y + DF   SGSLPE
Sbjct: 390 VSISNLSVYLEYLYLDFNAISGSLPE 415


>01_05_0035 + 17440828-17441364
          Length = 178

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -1

Query: 257 PPTSGSLPERGSQIHGLSRSLWFGTRKGQVRSFVRRL 147
           PP    LP     +HGL R    G+ +  V + VR L
Sbjct: 31  PPPPSPLPSSAEPLHGLCRKPGAGSHRALVATPVRAL 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,341,177
Number of Sequences: 37544
Number of extensions: 228928
Number of successful extensions: 521
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)