Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B10
         (410 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56123| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)           28   2.6  
SB_11292| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_53796| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_48714| Best HMM Match : TrmB (HMM E-Value=0.71)                     27   4.5  
SB_41195| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_33094| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_6796| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.9  

>SB_56123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
 Frame = -2

Query: 226 EARYMDCLEAYGL----ERGKVKCAHLFGDYHEC 137
           +A Y DCL +YGL    +R  V C +LF     C
Sbjct: 800 QANYQDCLASYGLQSLKDRRGVFCLNLFSSISTC 833


>SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)
          Length = 417

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 280 DVTGGMISHQLLGRCQKEEARYMDCLEAYGLERGKVK 170
           DV   M+ HQL       +  Y  CLE Y +E GK K
Sbjct: 283 DVPWNMLRHQLAYVAPDGKVDYRSCLEQYAIE-GKTK 318


>SB_11292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1529

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
 Frame = -2

Query: 226 EARYMDCLEAYGLE-----RGKVKCAHLFGDYHEC 137
           +A Y DCL +YGL+     RG++ C +LF     C
Sbjct: 726 QANYQDCLASYGLQSLKDRRGEL-CLNLFSSISTC 759


>SB_53796| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 211 DCLEAYGLERGKVKCAHLFGDYHECSTLTKQ 119
           DC   +  + GKV+CAH    Y  C+   K+
Sbjct: 362 DCSTCFCKKNGKVECAHQMCGYPVCANPIKE 392


>SB_48714| Best HMM Match : TrmB (HMM E-Value=0.71)
          Length = 199

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 335 VKLRKHHVFVAVLSLTVYGCY-WWHDFPPTSGSLPERG 225
           V+ RK+ V   VL L  +    WW D   TSG L E G
Sbjct: 59  VETRKYQVVNEVLWLDYFTAQIWWIDLDLTSGKLLETG 96


>SB_41195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 151 RRTNERT*PFLVPNHKLLDNPCIWLPLSGS 240
           RR  +RT P  + +H  LD P  WL   G+
Sbjct: 34  RRRTDRTDPTRILDHYALDPPTHWLVFQGA 63


>SB_33094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 75

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = -2

Query: 235 QKEEARYMDCLEAYGLERGKVKCAHLFGDYHECSTLTKQLKRFLAIRHERQRQISXRKTY 56
           ++EEAR     E +  ER + + A L GDY     L K  +    ++ E Q+     K  
Sbjct: 15  EEEEARRQKREELFEKERAE-RLARL-GDYKAQRKLDKAKREEARLKEEMQKAKEKEKAE 72

Query: 55  RRR 47
           RRR
Sbjct: 73  RRR 75


>SB_6796| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 925

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -2

Query: 178  KVKCAHLFGDYHECSTLTKQLKRFLAIRHERQRQISXRKTYRRRKVCE 35
            ++KCAH      E  T T  L  F A RH+ Q   +  +T  R ++CE
Sbjct: 875  ELKCAHGLDIVKELDT-TADLILF-ACRHDLQDNAAGPETEHRSEICE 920


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,823,066
Number of Sequences: 59808
Number of extensions: 248139
Number of successful extensions: 575
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)