Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B08
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    57   2e-08
U80028-2|AAN73869.1|  351|Caenorhabditis elegans Serpentine rece...    29   3.5  
U50312-3|AAA92320.2|  494|Caenorhabditis elegans Hypothetical pr...    29   4.6  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
 Frame = +2

Query: 200 SIYVPHPS-----LQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVS-NSYGYELLDI 361
           ++YVP  S      ++  +  N+     +  +I GD N+HH++W S  S ++ G EL ++
Sbjct: 5   NVYVPPRSSSSNHARLMTDFSNIFQTKSKS-IISGDVNAHHSAWHSEGSEDTRGRELAEL 63

Query: 362 LDMY-SLCILNSGSPTRLTKPGEVISAIDLSICTPQLASSLSWSTLCSTYNSDHYPI 529
           +D++  L I N    TR       IS+ D++ICT  LA+   WSTL     SDH P+
Sbjct: 64  IDLHPDLIIQNEQVHTRADTYS--ISSPDITICTADLATKCHWSTLYK-LGSDHIPM 117


>U80028-2|AAN73869.1|  351|Caenorhabditis elegans Serpentine
           receptor, class h protein88 protein.
          Length = 351

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = +2

Query: 83  YGGVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVDGI--CFVSIYVPHPSLQIFN-EIKNL 253
           +GG C+L ++    SS+ +P  +  F V   + D    C V+ Y+  P+L  F+  + N 
Sbjct: 45  FGGYCILYKSPKEMSSYRVPLFN--FHVWTCLADVFLNCLVTPYIFLPTLTGFSVGLLNF 102

Query: 254 ISVLPR 271
           + V P+
Sbjct: 103 LGVPPK 108


>U50312-3|AAA92320.2|  494|Caenorhabditis elegans Hypothetical
           protein B0222.3 protein.
          Length = 494

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +2

Query: 155 CFSVIAAIVDGICFVSIY--VPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSS 325
           C   I+ ++ GI    IY  V H  L+  N +KN +  LP  + +   FN+    W  S
Sbjct: 166 CSWFISPVLSGIISSIIYMIVDHTVLRTANPLKNGLRALPVFYFVCMAFNALMVFWDGS 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,467,947
Number of Sequences: 27780
Number of extensions: 314543
Number of successful extensions: 725
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)