Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B08
         (745 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01660.1 68418.m00082 kelch repeat-containing protein similar...    29   4.3  
At4g03620.1 68417.m00497 myosin heavy chain-related contains wea...    29   4.3  
At5g48880.2 68418.m06047 acetyl-CoA C-acyltransferase 1 / 3-keto...    28   5.7  
At5g37910.1 68418.m04567 seven in absentia (SINA) family protein...    28   7.5  
At4g31210.1 68417.m04432 DNA topoisomerase family protein simila...    27   9.9  

>At5g01660.1 68418.m00082 kelch repeat-containing protein similar to
           SP|P57790 Kelch-like ECH-associated protein 1 (Cytosolic
           inhibitor of Nrf2) {Rattus norvegicus}; contains Pfam
           profile PF01344: Kelch motif
          Length = 621

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 179 VDGICFVSIYVPHPSLQIFNEIKNL 253
           +DG C VS  +PH   Q+ +E+K L
Sbjct: 247 IDGSCLVSSPLPHTISQLMHEVKEL 271


>At4g03620.1 68417.m00497 myosin heavy chain-related contains weak
           similarity to Swiss-Prot:P24733 myosin heavy chain,
           striated muscle [Aequipecten irradians]
          Length = 342

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = -2

Query: 195 KQIPSTIAAMTEKQLLCEGRGKEEKVLEFLMSR 97
           K++ +++AA    Q++C   GKE++++   +SR
Sbjct: 164 KELSASMAARKSLQMMCSSLGKEKEIMALELSR 196


>At5g48880.2 68418.m06047 acetyl-CoA C-acyltransferase 1 /
           3-ketoacyl-CoA thiolase 1 (PKT1) identical to
           3-keto-acyl-CoA-thiolase 1 [Arabidopsis thaliana]
           GI:3169568
          Length = 457

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = -2

Query: 108 LMSRHTPPYPSALSSLKHE*PGILNTKSGFSQVS 7
           ++ RH  P  S+ SSLKHE P +L+  +  S+VS
Sbjct: 10  ILLRHLNPVSSSNSSLKHE-PSLLSPVNCVSEVS 42


>At5g37910.1 68418.m04567 seven in absentia (SINA) family protein
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 276

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 537 HFPETHATVIWRNIKRFRSA 596
           H+  TH+T I+ NIKRFR A
Sbjct: 143 HYKLTHSTNIFWNIKRFRCA 162


>At4g31210.1 68417.m04432 DNA topoisomerase family protein similar
           to DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis}
          Length = 1280

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 251 LISVLPRPFMILGDFNSHHTSWGSSVSNSYGY 346
           L   LP    +LG   S+ T W SS S ++GY
Sbjct: 69  LACALPSHLSLLGSL-SYATHWSSSTSRAFGY 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,681,711
Number of Sequences: 28952
Number of extensions: 296950
Number of successful extensions: 743
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)