Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B07
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb...    25   4.9  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    25   6.5  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.5  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   8.5  

>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -2

Query: 122 YYYKNNVIKHNLEYFSCNAY 63
           Y+Y+N++I +++EY    +Y
Sbjct: 101 YFYENDIIDYDIEYIEQKSY 120


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 336 VSNLMPITFFDNIACCSHLPIAYFILETIR 247
           V N+ P+    N+ CC   PI  FIL  +R
Sbjct: 485 VRNVCPLNL--NVCCCIAEPIQSFILSFLR 512


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
 Frame = -1

Query: 333 SNLMPITFFDNIACCSHLPIAYFILET---IRR----CSFFLSINVRYSFRL 199
           S+ +P+T   NI   +  P+A +++ET    RR    C+   SI V  ++R+
Sbjct: 9   SSKLPVTGIYNILLFNLFPLATYLVETFCFFRRWKIACTLLCSITVILAYRM 60


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 315  TFFDNIACCSHLPIAYFILETIRRCSF-FLSINVRYSFR 202
            T+F  ++C  +  IA F L+++R+ S  FL I     F+
Sbjct: 1221 TYFTQVSCHENSIIASFALDSLRQFSMQFLEIEELSHFK 1259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,885,928
Number of Sequences: 5004
Number of extensions: 36609
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)