Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_B06
(421 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33308| Best HMM Match : Ribosomal_L34e (HMM E-Value=9e-07) 58 2e-09
SB_41650| Best HMM Match : RVT_1 (HMM E-Value=1.6e-06) 30 0.68
SB_373| Best HMM Match : Somatomedin_B (HMM E-Value=3.5) 29 1.2
SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58) 29 2.1
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31) 29 2.1
SB_979| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.7
SB_36327| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_22814| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_50855| Best HMM Match : Ras (HMM E-Value=0) 27 6.3
SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_9363| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
>SB_33308| Best HMM Match : Ribosomal_L34e (HMM E-Value=9e-07)
Length = 58
Score = 58.4 bits (135), Expect = 2e-09
Identities = 29/54 (53%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Frame = -3
Query: 197 RPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKI-VKVLQGTTGE 39
RP + + +KTV R YGG C CVK+RI+RAFLIEEQKI V+VL+ G+
Sbjct: 2 RPMKLMHISKPQKTVSRAYGGSRCAACVKERIIRAFLIEEQKIVVRVLKAQQGK 55
>SB_41650| Best HMM Match : RVT_1 (HMM E-Value=1.6e-06)
Length = 299
Score = 30.3 bits (65), Expect = 0.68
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 351 IQATTVVQHKIKSKKNSKDTGWPLGLSV 268
I VQH K+KK + DT +P+G++V
Sbjct: 45 ISGEYAVQHSCKNKKETIDTDYPIGMAV 72
>SB_373| Best HMM Match : Somatomedin_B (HMM E-Value=3.5)
Length = 404
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 419 NEFGRPMPCHQLSKSLKMVQRLTFRRRLSYNTKSNQRRIVRT 294
N +P P Q+ + K RL RRL N +RR+++T
Sbjct: 154 NREWKPFPNKQIRRRRKSNLRLALTRRLGKNNPGKKRRVMQT 195
>SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)
Length = 429
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -3
Query: 344 RRLSYNTKSNQRRIVRTPGGRLVYQYVKKP 255
RR++ T SN R++RTP G+ ++ VK P
Sbjct: 159 RRITKTTNSNSTRLIRTP-GQSIHIKVKAP 187
>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
Length = 690
Score = 28.7 bits (61), Expect = 2.1
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = -2
Query: 390 PAVKKLENGAAAYIQATTVVQHKIKSKKNSKDTGWPLGLSVCKKAQEDPKVWSVQEQTPW 211
P VK+ ++AYI T+ + K+K+K T P V K A E+ K + +++ P+
Sbjct: 494 PVVKR---ASSAYIHFTSDFRAKLKAKSAKSGTPLPKANEVAKLAGEEWKKLNDEQKKPY 550
>SB_979| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 28.3 bits (60), Expect = 2.7
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 108 LLDTFMAEDTTINTFHCFLTVAKTGTFSRSSWLDTTEFALALTTPW 245
L+D + + + + HCF+T+ T T ++ S T F L +PW
Sbjct: 542 LIDELVKQSSCPSRAHCFITMTTTQTSTKISIAPTNTFFL---SPW 584
>SB_36327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 409
Score = 27.9 bits (59), Expect = 3.6
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = -3
Query: 218 LRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVKV 60
++G++ R + S C R V +VY +C +C + V+ + E ++ KV
Sbjct: 201 VKGVRDVRVNKVSERCLRGACVYKVYERCVCTRCTRGACVQG--LREVRVYKV 251
>SB_22814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 42
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 263 LHTDKPSGHPVSLLFFFDLI 322
LHT +P+GHP ++ FD I
Sbjct: 5 LHTTEPTGHPCHIVCCFDAI 24
>SB_50855| Best HMM Match : Ras (HMM E-Value=0)
Length = 733
Score = 27.1 bits (57), Expect = 6.3
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 99 DNALLDTFMAEDTTINTFHCFLTVAKTGTFSRSSWLDTTEF 221
DN LL + T +N FL + K G + L+ TEF
Sbjct: 155 DNGLLFMETSAKTAMNVNDIFLAIGKKGKKKKGKTLNLTEF 195
>SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 26.6 bits (56), Expect = 8.3
Identities = 14/60 (23%), Positives = 25/60 (41%)
Frame = -3
Query: 395 CHQLSKSLKMVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKL 216
C L+ + ++ T + +Y K N +V P G Q ++ CG K++L
Sbjct: 36 CSALTSTSALIDHTTIKLFGTYEEKGNLFFVVVAPSGSDKIQPARRVASTRSCGNSKTRL 95
>SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1333
Score = 26.6 bits (56), Expect = 8.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 120 MCQATHCQSLPH*RTKNCEGP 58
+CQ HC LP R K+C+ P
Sbjct: 115 VCQDDHCACLPCWRGKSCDQP 135
>SB_9363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 26.6 bits (56), Expect = 8.3
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 122 YGRGHHH-KHVSLFSYGSKDGNVQQV*LAGYHGVCSCTDHTL 244
YG H K + L YG+ G V+++ L GY HTL
Sbjct: 238 YGTSHGLVKEIDLRGYGTSHGPVKEIELRGYGTSYRGPSHTL 279
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,918,687
Number of Sequences: 59808
Number of extensions: 266790
Number of successful extensions: 805
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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