Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B05
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                  189   2e-48
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)              67   1e-11
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.024
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.024
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.024
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.024
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.024
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.024
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score =  189 bits (460), Expect = 2e-48
 Identities = 90/149 (60%), Positives = 109/149 (73%)
 Frame = -3

Query: 612 IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPXIL*RLGFVFLFTVGGLTGV 433
           +++DTRAYFT+AT+IIAVPTGIK+F  LAT++G  I  +  +L  +GFVFLFT+GGLTGV
Sbjct: 1   MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGV 60

Query: 432 ILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXIN*YPLFTGLSLNSYILKIQFFT 253
           ILANSS+D+ +HDTYYVVAHFHYVLS              +   TG   N    KI F+ 
Sbjct: 61  ILANSSLDVVMHDTYYVVAHFHYVLSMGAVFAIFAGFYFWFGKITGYCYNELYGKIHFWI 120

Query: 252 IFIGVNITFFPXHFLGLAGIPRRYSDYPD 166
           +FIGVNITFFP HFLGLAG PRRYSD+ D
Sbjct: 121 MFIGVNITFFPQHFLGLAGFPRRYSDFAD 149


>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 30/45 (66%), Positives = 33/45 (73%)
 Frame = -3

Query: 300 TGLSLNSYILKIQFFTIFIGVNITFFPXHFLGLAGIPRRYSDYPD 166
           TG   N    KI F+ +FIGVNITFFP HFLGLAG PRRYSD+ D
Sbjct: 19  TGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFAD 63


>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 216 HFLGLAGIPRRYSDYPD 166
           HFLGLAG PRRYSD+ D
Sbjct: 1   HFLGLAGFPRRYSDFAD 17


>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 216 HFLGLAGIPRRYSDYPD 166
           HFLGLAG PRRYSD+ D
Sbjct: 1   HFLGLAGFPRRYSDFAD 17


>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 216 HFLGLAGIPRRYSDYPD 166
           HFLGLAG PRRYSD+ D
Sbjct: 1   HFLGLAGFPRRYSDFAD 17


>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 216 HFLGLAGIPRRYSDYPD 166
           HFLGLAG PRRYSD+ D
Sbjct: 1   HFLGLAGFPRRYSDFAD 17


>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 216 HFLGLAGIPRRYSDYPD 166
           HFLGLAG PRRYSD+ D
Sbjct: 1   HFLGLAGFPRRYSDFAD 17


>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 216 HFLGLAGIPRRYSDYPD 166
           HFLGLAG PRRYSD+ D
Sbjct: 1   HFLGLAGFPRRYSDFAD 17


>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -2

Query: 313 ISFIYRPXIKFLYTKNSIFYNIYWSK--YNIFSTTFFRFSWNT 191
           + FIY   + FL +KN  F+  YW+   YN F        W T
Sbjct: 14  VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAFGQRSPNSRWRT 56


>SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 633 HHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPXIL 484
           HH+ T+ I +         T+I   PT I +   +  +H T IN +P ++
Sbjct: 14  HHLHTIIIHLHPTVIHLHPTVIFLHPTVIHLHPTVLNLHPTIINLHPTVI 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,641,700
Number of Sequences: 59808
Number of extensions: 179861
Number of successful extensions: 285
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)