Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B04
         (536 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q14957 Cluster: Glutamate [NMDA] receptor subunit epsil...    32   7.3  

>UniRef50_Q14957 Cluster: Glutamate [NMDA] receptor subunit
           epsilon-3 precursor; n=13; Theria|Rep: Glutamate [NMDA]
           receptor subunit epsilon-3 precursor - Homo sapiens
           (Human)
          Length = 1233

 Score = 32.3 bits (70), Expect = 7.3
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +2

Query: 440 SRELFPPRPVLNFTWGGCDWXTS*GGYLVTP 532
           +RE F  R +LN TW G D+  S GGYLV P
Sbjct: 327 AREAFY-RHLLNVTWEGRDFSFSPGGYLVQP 356


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 438,948,955
Number of Sequences: 1657284
Number of extensions: 6720449
Number of successful extensions: 12746
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 12527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12746
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34156095254
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)