Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B04
         (536 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77782-1|AAB71624.1| 1236|Homo sapiens N-methyl-D-aspartate rece...    32   1.1  
L76224-1|AAA88096.1| 1233|Homo sapiens NMDA receptor protein.          32   1.1  
BC041128-1|AAH41128.1|  907|Homo sapiens Similar to glutamate re...    32   1.1  

>U77782-1|AAB71624.1| 1236|Homo sapiens N-methyl-D-aspartate
           receptor 2C subunit precursor protein.
          Length = 1236

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +2

Query: 440 SRELFPPRPVLNFTWGGCDWXTS*GGYLVTP 532
           +RE F  R +LN TW G D+  S GGYLV P
Sbjct: 327 AREAFY-RHLLNVTWEGRDFSFSPGGYLVQP 356


>L76224-1|AAA88096.1| 1233|Homo sapiens NMDA receptor protein.
          Length = 1233

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +2

Query: 440 SRELFPPRPVLNFTWGGCDWXTS*GGYLVTP 532
           +RE F  R +LN TW G D+  S GGYLV P
Sbjct: 327 AREAFY-RHLLNVTWEGRDFSFSPGGYLVQP 356


>BC041128-1|AAH41128.1|  907|Homo sapiens Similar to glutamate
           receptor, ionotropic, N-methyl D-aspartate 2C protein.
          Length = 907

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +2

Query: 440 SRELFPPRPVLNFTWGGCDWXTS*GGYLVTP 532
           +RE F  R +LN TW G D+  S GGYLV P
Sbjct: 361 AREAFY-RHLLNVTWEGRDFSFSPGGYLVQP 390


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,286,184
Number of Sequences: 237096
Number of extensions: 1080255
Number of successful extensions: 1569
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1569
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5273648886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)