Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B04
         (536 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   3.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   8.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   8.0  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 415 RPSVMKKATKKMLCLKQDCGTILSR 341
           RP+++KK TKK +  + D  + L R
Sbjct: 8   RPTIVKKRTKKFIRHQSDRYSKLKR 32


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 345 VGSCSYLKKILVMYRVCLE 289
           VGSC    +IL   R CL+
Sbjct: 273 VGSCRKTDQILYFIRGCLQ 291


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 345 VGSCSYLKKILVMYRVCLE 289
           VGSC    +IL   R CL+
Sbjct: 311 VGSCRKTDQILYFIRGCLQ 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,822
Number of Sequences: 438
Number of extensions: 2350
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)