Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B04
         (536 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67100.1 68418.m08460 DNA-directed DNA polymerase alpha catal...    30   0.85 
At5g10110.1 68418.m01171 expressed protein                             28   3.4  

>At5g67100.1 68418.m08460 DNA-directed DNA polymerase alpha catalytic
            subunit, putative similar to SP|O48653 DNA polymerase
            alpha catalytic subunit (EC 2.7.7.7) {Oryza sativa};
            contains Pfam profiles: PF03175 DNA polymerase type B,
            organellar and viral, PF00136 DNA polymerase family B,
            PF03104 DNA polymerase family B, exonuclease domain
          Length = 1492

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 430  QVLRTRPSVMKKATKKMLCLKQDCGTILSRFMFIFKKNISNV 305
            +V   +  V+++  KK  CLK DC  I  R + + KK  + V
Sbjct: 1061 EVKAIKSKVIQEVNKKYRCLKIDCDGIYKRMLLLRKKKYAAV 1102


>At5g10110.1 68418.m01171 expressed protein
          Length = 321

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = -2

Query: 508 TGXPVATAPREVEDRTRWKQLTRGQGQVLRTRPSVMKKATKKMLCLKQDCGTILSRFM 335
           TG  V+ A +E +   +W+ L    G +L    S ++ +  +M  L+ DC   L R M
Sbjct: 256 TGNSVS-AKQESKLMAQWRSLFLSMGDILSEESSHLQNSFVRMKKLRDDCKMDLERAM 312


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,461,334
Number of Sequences: 28952
Number of extensions: 145381
Number of successful extensions: 293
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)