Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B03
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    28   0.96 
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      26   5.1  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    26   5.1  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 28.3 bits (60), Expect = 0.96
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 142 YIQIQPNLFNVSTFSIENDIFMVISFSVSDF*ELL 246
           Y+QIQ  LF +       DIF+ I   + D  +LL
Sbjct: 867 YMQIQEQLFQLDICEYSGDIFLTIQRKLQDLIDLL 901


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 319 KLLYNVKISLILMFNALASLIIILKLYYFRQN 414
           KLLYN   ++  +FNAL  L      + F++N
Sbjct: 316 KLLYNASFAITSLFNALLILDPKSSTFIFQEN 347


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/27 (33%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -1

Query: 508 FFLIREKI-PSLFKYCYGKQLKYGSQF 431
           + +++E +   +FK CY ++L+YG +F
Sbjct: 274 YSVVKESLLEEMFKECYLQKLRYGQEF 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,430,416
Number of Sequences: 5004
Number of extensions: 50291
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)