Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B03
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0788 + 25223373-25223405,25224285-25224373,25224496-252246...    35   0.046
03_02_0359 - 7788382-7788522,7788931-7789837,7791227-7791337,779...    27   9.2  

>01_05_0788 +
           25223373-25223405,25224285-25224373,25224496-25224624,
           25224710-25224766,25224844-25224916,25225509-25225667,
           25226755-25226904,25227013-25227268,25227358-25227479,
           25227531-25227599,25227653-25227739,25227842-25227930,
           25228168-25228224,25229162-25229258,25229348-25229506
          Length = 541

 Score = 35.1 bits (77), Expect = 0.046
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
 Frame = -3

Query: 254 KYLSNS*KSETLKLMTIKISFSIEKVDTLK---RFG*ICIYIFICNRLSLFALSTK 96
           K+  NS K+  ++ +T+  SF +E    L+    FG + +Y +IC+R ++F  S K
Sbjct: 72  KFRINSTKANLIRFITMDESFLLENRAVLRAMAEFGIVLVYFYICDRTNIFPESKK 127


>03_02_0359 -
           7788382-7788522,7788931-7789837,7791227-7791337,
           7791437-7791507,7791582-7791659,7792564-7792770,
           7792867-7793046,7793249-7793471,7794133-7794453,
           7794538-7795109
          Length = 936

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 25/75 (33%), Positives = 37/75 (49%)
 Frame = -3

Query: 368 KALNIRIKLILTLYNSFINYMIFQILDKEMCNT*IIRKKYLSNS*KSETLKLMTIKISFS 189
           K + I   +ILT Y   IN++ F +  +   N   IR  Y  NS K   L++ TI     
Sbjct: 153 KMITIGSMVILTTYG-LINFLKFFVQLRSTLN---IRDFYC-NSLKITDLEIQTISWPKI 207

Query: 188 IEKVDTLKRFG*ICI 144
           IEKV  L++   +C+
Sbjct: 208 IEKVVLLQKSQKLCV 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,745,370
Number of Sequences: 37544
Number of extensions: 219739
Number of successful extensions: 319
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)