Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B03
         (628 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_39426| Best HMM Match : C4 (HMM E-Value=0)                          30   1.3  
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_14785| Best HMM Match : Nuc_sug_transp (HMM E-Value=5.1e-15)        28   5.4  
SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  

>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1705

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -1

Query: 628  KSGQLLXRVSRCAVCIK 578
            K+G LL RVSRC VCI+
Sbjct: 1645 KAGNLLSRVSRCQVCIR 1661


>SB_39426| Best HMM Match : C4 (HMM E-Value=0)
          Length = 188

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -1

Query: 628 KSGQLLXRVSRCAVCIK 578
           K+G LL RVSRC VCI+
Sbjct: 128 KAGNLLSRVSRCQVCIR 144


>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1853

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -1

Query: 628  KSGQLLXRVSRCAVCIKN 575
            K+G L  RVSRC VC KN
Sbjct: 1821 KAGNLRERVSRCQVCQKN 1838


>SB_14785| Best HMM Match : Nuc_sug_transp (HMM E-Value=5.1e-15)
          Length = 261

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 127 LQIKIYIQIQPNLFNVSTFSIENDIFMVISFSVSDF*ELLRYFL 258
           L + + ++ + N+F V +F + N + +  S    DF   L +FL
Sbjct: 179 LTVALILKFRDNMFQVMSFQLTNVLIITSSVLFMDFHPALEFFL 222


>SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 826

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 508 FFLIREKIPSLFKYCYGKQLKYGSQF 431
           F+L    IP +F  C     KYG QF
Sbjct: 776 FYLFSRAIPPIFMACAASSPKYGDQF 801


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,141,248
Number of Sequences: 59808
Number of extensions: 296433
Number of successful extensions: 510
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)