Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_B03
(628 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U47004-2|AAB19039.1| 1690|Homo sapiens collagen type IV a6 chain... 30 7.7
U47004-1|AAB19038.1| 1691|Homo sapiens collagen type IV a6 chain... 30 7.7
U04845-1|AAA19569.2| 1691|Homo sapiens A type IV collagen protein. 30 7.7
D21337-1|BAA04809.1| 1678|Homo sapiens collagen protein. 30 7.7
AL136080-2|CAI40758.1| 1691|Homo sapiens collagen type IV alpha ... 30 7.7
AL136080-1|CAI40756.1| 1690|Homo sapiens collagen type IV alpha ... 30 7.7
AL109943-2|CAI42995.1| 1691|Homo sapiens collagen type IV alpha ... 30 7.7
AL109943-1|CAI42993.1| 1690|Homo sapiens collagen type IV alpha ... 30 7.7
AL034369-3|CAI42047.1| 1691|Homo sapiens collagen type IV alpha ... 30 7.7
AL034369-2|CAI42045.1| 1690|Homo sapiens collagen type IV alpha ... 30 7.7
AL031177-13|CAI43140.1| 1691|Homo sapiens collagen type IV alpha... 30 7.7
AL031177-12|CAI43139.1| 1690|Homo sapiens collagen type IV alpha... 30 7.7
>U47004-2|AAB19039.1| 1690|Homo sapiens collagen type IV a6 chain
protein.
Length = 1690
Score = 29.9 bits (64), Expect = 7.7
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -1
Query: 628 KSGQLLXRVSRCAVCIKN 575
K+GQL RVSRC VC+K+
Sbjct: 1672 KAGQLHTRVSRCQVCMKS 1689
>U47004-1|AAB19038.1| 1691|Homo sapiens collagen type IV a6 chain
protein.
Length = 1691
Score = 29.9 bits (64), Expect = 7.7
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -1
Query: 628 KSGQLLXRVSRCAVCIKN 575
K+GQL RVSRC VC+K+
Sbjct: 1673 KAGQLHTRVSRCQVCMKS 1690
>U04845-1|AAA19569.2| 1691|Homo sapiens A type IV collagen protein.
Length = 1691
Score = 29.9 bits (64), Expect = 7.7
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -1
Query: 628 KSGQLLXRVSRCAVCIKN 575
K+GQL RVSRC VC+K+
Sbjct: 1673 KAGQLHTRVSRCQVCMKS 1690
>D21337-1|BAA04809.1| 1678|Homo sapiens collagen protein.
Length = 1678
Score = 29.9 bits (64), Expect = 7.7
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -1
Query: 628 KSGQLLXRVSRCAVCIKN 575
K+GQL RVSRC VC+K+
Sbjct: 1660 KAGQLHTRVSRCQVCMKS 1677
>AL136080-2|CAI40758.1| 1691|Homo sapiens collagen type IV alpha 6
protein.
Length = 1691
Score = 29.9 bits (64), Expect = 7.7
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -1
Query: 628 KSGQLLXRVSRCAVCIKN 575
K+GQL RVSRC VC+K+
Sbjct: 1673 KAGQLHTRVSRCQVCMKS 1690
>AL136080-1|CAI40756.1| 1690|Homo sapiens collagen type IV alpha 6
protein.
Length = 1690
Score = 29.9 bits (64), Expect = 7.7
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -1
Query: 628 KSGQLLXRVSRCAVCIKN 575
K+GQL RVSRC VC+K+
Sbjct: 1672 KAGQLHTRVSRCQVCMKS 1689
>AL109943-2|CAI42995.1| 1691|Homo sapiens collagen type IV alpha 6
protein.
Length = 1691
Score = 29.9 bits (64), Expect = 7.7
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -1
Query: 628 KSGQLLXRVSRCAVCIKN 575
K+GQL RVSRC VC+K+
Sbjct: 1673 KAGQLHTRVSRCQVCMKS 1690
>AL109943-1|CAI42993.1| 1690|Homo sapiens collagen type IV alpha 6
protein.
Length = 1690
Score = 29.9 bits (64), Expect = 7.7
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -1
Query: 628 KSGQLLXRVSRCAVCIKN 575
K+GQL RVSRC VC+K+
Sbjct: 1672 KAGQLHTRVSRCQVCMKS 1689
>AL034369-3|CAI42047.1| 1691|Homo sapiens collagen type IV alpha 6
protein.
Length = 1691
Score = 29.9 bits (64), Expect = 7.7
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -1
Query: 628 KSGQLLXRVSRCAVCIKN 575
K+GQL RVSRC VC+K+
Sbjct: 1673 KAGQLHTRVSRCQVCMKS 1690
>AL034369-2|CAI42045.1| 1690|Homo sapiens collagen type IV alpha 6
protein.
Length = 1690
Score = 29.9 bits (64), Expect = 7.7
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -1
Query: 628 KSGQLLXRVSRCAVCIKN 575
K+GQL RVSRC VC+K+
Sbjct: 1672 KAGQLHTRVSRCQVCMKS 1689
>AL031177-13|CAI43140.1| 1691|Homo sapiens collagen type IV alpha 6
protein.
Length = 1691
Score = 29.9 bits (64), Expect = 7.7
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -1
Query: 628 KSGQLLXRVSRCAVCIKN 575
K+GQL RVSRC VC+K+
Sbjct: 1673 KAGQLHTRVSRCQVCMKS 1690
>AL031177-12|CAI43139.1| 1690|Homo sapiens collagen type IV alpha 6
protein.
Length = 1690
Score = 29.9 bits (64), Expect = 7.7
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -1
Query: 628 KSGQLLXRVSRCAVCIKN 575
K+GQL RVSRC VC+K+
Sbjct: 1672 KAGQLHTRVSRCQVCMKS 1689
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,975,654
Number of Sequences: 237096
Number of extensions: 1454453
Number of successful extensions: 5463
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5454
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6804036910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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