Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_B03
(628 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 33 0.22
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 33 0.22
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 33 0.22
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 33 0.22
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 33 0.22
J05066-1|AAA27989.1| 261|Caenorhabditis elegans alpha-2 (IV) co... 33 0.22
U28740-2|AAM51506.2| 417|Caenorhabditis elegans Hypothetical pr... 31 0.51
U28740-1|AAA68317.3| 434|Caenorhabditis elegans Hypothetical pr... 31 0.51
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 29 2.1
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 29 2.1
J05067-1|AAB59179.1| 313|Caenorhabditis elegans clb-2 protein. 29 2.1
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = -1
Query: 628 KSGQLLXRVSRCAVCIKNTT*SH 560
KSG L RVSRC VC+K+T H
Sbjct: 1737 KSGNLRTRVSRCQVCVKSTDGRH 1759
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = -1
Query: 628 KSGQLLXRVSRCAVCIKNTT*SH 560
KSG L RVSRC VC+K+T H
Sbjct: 1736 KSGNLRTRVSRCQVCVKSTDGRH 1758
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = -1
Query: 628 KSGQLLXRVSRCAVCIKNTT*SH 560
KSG L RVSRC VC+K+T H
Sbjct: 1736 KSGNLRTRVSRCQVCVKSTDGRH 1758
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = -1
Query: 628 KSGQLLXRVSRCAVCIKNTT*SH 560
KSG L RVSRC VC+K+T H
Sbjct: 1737 KSGNLRTRVSRCQVCVKSTDGRH 1759
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
protein.
Length = 1795
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = -1
Query: 628 KSGQLLXRVSRCAVCIKNTT*SH 560
KSG L RVSRC VC+K+T H
Sbjct: 1773 KSGNLRTRVSRCQVCVKSTDGRH 1795
>J05066-1|AAA27989.1| 261|Caenorhabditis elegans alpha-2 (IV)
collagen protein.
Length = 261
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = -1
Query: 628 KSGQLLXRVSRCAVCIKNTT*SH 560
KSG L RVSRC VC+K+T H
Sbjct: 239 KSGNLRTRVSRCQVCVKSTDGRH 261
>U28740-2|AAM51506.2| 417|Caenorhabditis elegans Hypothetical
protein B0563.6b protein.
Length = 417
Score = 31.5 bits (68), Expect = 0.51
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 372 LTNHNSETILFSTKSKFVIKN*LPYFNCFP*QYLNKDGIFSLIRKKQQYPIQK 530
+TNH S+ +F S L F CF Y N+D + S +R+ Q IQK
Sbjct: 291 ITNHASQFYVFCACSTDYRTTFLQKFPCFKTDYANRDRLRSFVRRTQSV-IQK 342
>U28740-1|AAA68317.3| 434|Caenorhabditis elegans Hypothetical
protein B0563.6a protein.
Length = 434
Score = 31.5 bits (68), Expect = 0.51
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 372 LTNHNSETILFSTKSKFVIKN*LPYFNCFP*QYLNKDGIFSLIRKKQQYPIQK 530
+TNH S+ +F S L F CF Y N+D + S +R+ Q IQK
Sbjct: 300 ITNHASQFYVFCACSTDYRTTFLQKFPCFKTDYANRDRLRSFVRRTQSV-IQK 351
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -1
Query: 628 KSGQLLXRVSRCAVCIKN 575
K+G L RVSRC VC+KN
Sbjct: 1484 KAGGLKDRVSRCQVCLKN 1501
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -1
Query: 628 KSGQLLXRVSRCAVCIKN 575
K+G L RVSRC VC+KN
Sbjct: 1741 KAGGLKDRVSRCQVCLKN 1758
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -1
Query: 628 KSGQLLXRVSRCAVCIKN 575
K+G L RVSRC VC+KN
Sbjct: 1740 KAGGLKDRVSRCQVCLKN 1757
>J05067-1|AAB59179.1| 313|Caenorhabditis elegans clb-2 protein.
Length = 313
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -1
Query: 628 KSGQLLXRVSRCAVCIKN 575
K+G L RVSRC VC+KN
Sbjct: 295 KAGGLKDRVSRCQVCLKN 312
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,959,652
Number of Sequences: 27780
Number of extensions: 266419
Number of successful extensions: 541
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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