Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B02
         (603 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26175| Best HMM Match : No HMM Matches (HMM E-Value=.)             202   1e-58
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)                31   0.95 
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)         29   2.2  
SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06)                  29   2.9  
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)           29   3.8  
SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10)                 29   3.8  
SB_28628| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_9745| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.7  
SB_10099| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.6e-17)         27   8.8  

>SB_26175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score =  202 bits (494), Expect(2) = 1e-58
 Identities = 86/116 (74%), Positives = 100/116 (86%)
 Frame = -2

Query: 512 IPEGKSVTFKWRGKPLFIRHRTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCT 333
           I  GK++ FKWRGKPLF+RHRTADEIS E+ V V +LR P+ D  R ++ KWLV+IGVCT
Sbjct: 110 ITSGKNMVFKWRGKPLFVRHRTADEISEEQNVDVASLRHPEADADRVKDDKWLVLIGVCT 169

Query: 332 HLGCVPVANAGEFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPPHTFMDEGLLVVG 165
           HLGCVP++NAGE+GGYYCPCHGSHYDASGRIRKGPAPLNLEVP H+F+DE  LVVG
Sbjct: 170 HLGCVPISNAGEYGGYYCPCHGSHYDASGRIRKGPAPLNLEVPEHSFLDESTLVVG 225



 Score = 41.9 bits (94), Expect(2) = 1e-58
 Identities = 19/33 (57%), Positives = 28/33 (84%)
 Frame = -2

Query: 596 SVVTHFVSSMSAAADVLALAKIEIKLAEIPEGK 498
           +++ +F+S+MSA+ADVLA+AKIE+ L  IPE K
Sbjct: 46  NLLVNFLSTMSASADVLAMAKIEVDLNTIPEEK 78


>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
          Length = 3809

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = -3

Query: 529 KSSWLKFQKESLSPSNGEENHCLSVTGQQTKSRPRRLCLSTRSVTLSTTINVPK 368
           K + ++ +  +     G +N+ L +TGQ+T +  +R       +TL T  +VPK
Sbjct: 245 KETEIRHRFRNSESDGGAKNNLLQITGQKTDNSVKRPIRGNIRITLVTKSSVPK 298


>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
          Length = 1692

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 248  RKHRSGSRGRDSSNPRIHQ-HWLP 316
            R HR+G RGRD++  R  Q +W+P
Sbjct: 1595 RAHRAGHRGRDATLARFRQYYWVP 1618


>SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06)
          Length = 625

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 509 EFQPA*FQSWLKPKHQQPLTLMTQSG 586
           +F P+ F ++L P+ Q P  LM+ SG
Sbjct: 422 DFDPSEFDAYLNPEQQDPALLMSPSG 447


>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
          Length = 1806

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = -2

Query: 539  AKIEIKLAEIPEGKSVTFKWRGKPLFIRHRTADEISTEKAVPVDTLRDPQHDDQR 375
            AK +    E  +GK+   + + KP  ++ ++ D+  +E+  P     DP+HD Q+
Sbjct: 907  AKPDQAKTEPDQGKTKPDQRKDKPDQVQAKSRDKPDSEQPQPDQEQTDPKHDGQK 961


>SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10)
          Length = 1514

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -2

Query: 323  CVPVANAG-EFGGYYCPCHGSHY 258
            CVPVAN G + G Y C C   +Y
Sbjct: 1089 CVPVANQGFQRGSYECKCKPGYY 1111


>SB_28628| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 319 THPKWVHTPITTNHL 363
           THPK  +TP+T NH+
Sbjct: 16  THPKLTYTPVTPNHI 30


>SB_9745| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 254 HRSGSRGRDSSNPRIHQHWLPARI 325
           HR G R R S +P + +  LPAR+
Sbjct: 6   HRGGGRSRTSGSPGLQEFDLPARL 29


>SB_10099| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.6e-17)
          Length = 629

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 356 LVVIGVCTHLGCVPVANAGEFGGYYCPCHGSHYDAS 249
           L VIGV  HL  VPV  +G+F     P  G +++++
Sbjct: 311 LSVIGVVAHLLTVPVGTSGQFSTKSTPA-GKYWNST 345


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,631,986
Number of Sequences: 59808
Number of extensions: 418377
Number of successful extensions: 1092
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)