Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B02
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038618-8|AAB92071.1|  276|Caenorhabditis elegans Iron-sulfur p...   218   2e-57
AY825249-1|AAX24101.1|  728|Caenorhabditis elegans sodium-couple...    29   2.6  
AL110485-24|CAB60372.4|  728|Caenorhabditis elegans Hypothetical...    29   2.6  
Z84574-8|CAE54891.1|  921|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z84574-7|CAB06544.3|  928|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AL022593-4|CAE54889.1|  921|Caenorhabditis elegans Hypothetical ...    28   4.5  
AL022593-3|CAA18635.3|  928|Caenorhabditis elegans Hypothetical ...    28   4.5  
AL021386-3|CAA16167.1|  330|Caenorhabditis elegans Hypothetical ...    28   5.9  

>AF038618-8|AAB92071.1|  276|Caenorhabditis elegans Iron-sulfur
           protein protein 1 protein.
          Length = 276

 Score =  218 bits (533), Expect = 2e-57
 Identities = 95/141 (67%), Positives = 115/141 (81%)
 Frame = -2

Query: 593 VVTHFVSSMSAAADVLALAKIEIKLAEIPEGKSVTFKWRGKPLFIRHRTADEISTEKAVP 414
           VV   VS  + AAD  ALA IEI +A+IPEGK+ TF+WRGKP+F++HRT  EI+ EKAVP
Sbjct: 133 VVQTLVSYKAMAADQRALASIEINMADIPEGKTKTFEWRGKPVFVKHRTKAEIAKEKAVP 192

Query: 413 VDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAGEFGGYYCPCHGSHYDASGRIRK 234
           V  LR PQHDD+R Q  +W VVIGVCTHLGCVP+A+AG++GGYYCPCHGSHYDASGRIRK
Sbjct: 193 VADLRHPQHDDERVQKDEWSVVIGVCTHLGCVPIADAGDYGGYYCPCHGSHYDASGRIRK 252

Query: 233 GPAPLNLEVPPHTFMDEGLLV 171
           GPAPLNL VP ++F D  +++
Sbjct: 253 GPAPLNLHVPAYSFKDATIVI 273


>AY825249-1|AAX24101.1|  728|Caenorhabditis elegans sodium-coupled
           neutral amino acidtransporter protein.
          Length = 728

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 434 STEKAVPVDTLRDPQHDDQ-RTQNPKWLVVIGVCTHLGCVPVANAGEFGGYY 282
           STE A+ VD      +D   R +N KW+VVI  C+ L C+ +  +   G Y+
Sbjct: 472 STEIAL-VDVFCSCIYDQYPRFRNRKWIVVIAWCSVLYCIGLVFSTRAGYYW 522


>AL110485-24|CAB60372.4|  728|Caenorhabditis elegans Hypothetical
           protein Y46G5A.30 protein.
          Length = 728

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 434 STEKAVPVDTLRDPQHDDQ-RTQNPKWLVVIGVCTHLGCVPVANAGEFGGYY 282
           STE A+ VD      +D   R +N KW+VVI  C+ L C+ +  +   G Y+
Sbjct: 472 STEIAL-VDVFCSCIYDQYPRFRNRKWIVVIAWCSVLYCIGLVFSTRAGYYW 522


>Z84574-8|CAE54891.1|  921|Caenorhabditis elegans Hypothetical
           protein F33E2.2b protein.
          Length = 921

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 462 YPSQDSRRNLDREGCACRHAP*PSARRSTYP 370
           YPS+++   L+ +GC C HA  P A+    P
Sbjct: 685 YPSRNAPHQLE-DGCCCAHARAPRAKSIAVP 714


>Z84574-7|CAB06544.3|  928|Caenorhabditis elegans Hypothetical
           protein F33E2.2a protein.
          Length = 928

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 462 YPSQDSRRNLDREGCACRHAP*PSARRSTYP 370
           YPS+++   L+ +GC C HA  P A+    P
Sbjct: 692 YPSRNAPHQLE-DGCCCAHARAPRAKSIAVP 721


>AL022593-4|CAE54889.1|  921|Caenorhabditis elegans Hypothetical
           protein F33E2.2b protein.
          Length = 921

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 462 YPSQDSRRNLDREGCACRHAP*PSARRSTYP 370
           YPS+++   L+ +GC C HA  P A+    P
Sbjct: 685 YPSRNAPHQLE-DGCCCAHARAPRAKSIAVP 714


>AL022593-3|CAA18635.3|  928|Caenorhabditis elegans Hypothetical
           protein F33E2.2a protein.
          Length = 928

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 462 YPSQDSRRNLDREGCACRHAP*PSARRSTYP 370
           YPS+++   L+ +GC C HA  P A+    P
Sbjct: 692 YPSRNAPHQLE-DGCCCAHARAPRAKSIAVP 721


>AL021386-3|CAA16167.1|  330|Caenorhabditis elegans Hypothetical
           protein F57E7.3 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 360 LGVLGTLIVVLRVTERVDRHSLLGRDFVCCP--VTDKQWF 473
           LG+ GTL ++ R T+  + H  +   F C P  + DK  F
Sbjct: 147 LGLTGTLAILFRTTDSRESHLKVLEKFPCLPKDIIDKPGF 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,279,206
Number of Sequences: 27780
Number of extensions: 306688
Number of successful extensions: 916
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)