Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_B02
(603 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g13430.1 68418.m01546 ubiquinol-cytochrome C reductase iron-s... 206 7e-54
At5g13440.1 68418.m01547 ubiquinol-cytochrome C reductase iron-s... 206 9e-54
At4g03280.2 68417.m00448 cytochrome B6-F complex iron-sulfur sub... 65 4e-11
At4g03280.1 68417.m00447 cytochrome B6-F complex iron-sulfur sub... 65 4e-11
At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) / chlorop... 31 0.44
At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop... 31 0.44
At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) / chlorop... 31 0.44
At5g54370.1 68418.m06770 late embryogenesis abundant protein-rel... 28 5.5
At4g01930.1 68417.m00257 DC1 domain-containing protein contains ... 28 5.5
At1g27100.1 68414.m03303 expressed protein contains Pfam profil... 28 5.5
At4g29890.1 68417.m04253 choline monooxygenase, putative (CMO-li... 27 9.6
At4g01920.1 68417.m00255 DC1 domain-containing protein similar t... 27 9.6
At4g01910.1 68417.m00251 DC1 domain-containing protein contains ... 27 9.6
At1g47570.1 68414.m05281 zinc finger (C3HC4-type RING finger) fa... 27 9.6
>At5g13430.1 68418.m01546 ubiquinol-cytochrome C reductase
iron-sulfur subunit, mitochondrial, putative / Rieske
iron-sulfur protein, putative similar to
ubiquinol--cytochrome-c reductase from Solanum tuberosum
[SP|P37841], Nicotiana tabacum [SP|P51132] [SP|P51133];
non-consensus AT acceptor splice site at exon 2
Length = 272
Score = 206 bits (504), Expect = 7e-54
Identities = 87/143 (60%), Positives = 112/143 (78%)
Frame = -2
Query: 593 VVTHFVSSMSAAADVLALAKIEIKLAEIPEGKSVTFKWRGKPLFIRHRTADEISTEKAVP 414
+V + SMSA+ DVLALA +E+ L I G +VT KWRGKP+FIR RT D+I +V
Sbjct: 130 LVLKLIVSMSASKDVLALASLEVDLGSIEPGTTVTVKWRGKPVFIRRRTEDDIKLANSVD 189
Query: 413 VDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAGEFGGYYCPCHGSHYDASGRIRK 234
V +LRDPQ D R +NP+WLVV+GVCTHLGC+P+ NAG++GG++CPCHGSHYD SGRIRK
Sbjct: 190 VGSLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDYGGWFCPCHGSHYDISGRIRK 249
Query: 233 GPAPLNLEVPPHTFMDEGLLVVG 165
GPAP NLEVP ++F++E L++G
Sbjct: 250 GPAPYNLEVPTYSFLEENKLLIG 272
>At5g13440.1 68418.m01547 ubiquinol-cytochrome C reductase
iron-sulfur subunit, mitochondrial, putative / Rieske
iron-sulfur protein, putative similar to
ubiquinol--cytochrome-c reductase from Solanum tuberosum
[SP|P37841], Nicotiana tabacum [SP|P51132] [SP|P51133]
Length = 274
Score = 206 bits (503), Expect = 9e-54
Identities = 86/143 (60%), Positives = 112/143 (78%)
Frame = -2
Query: 593 VVTHFVSSMSAAADVLALAKIEIKLAEIPEGKSVTFKWRGKPLFIRHRTADEISTEKAVP 414
+V + SMSA+ DVLALA +E+ L I G +VT KWRGKP+FIR RT D+I +V
Sbjct: 132 LVLKLIVSMSASKDVLALASLEVDLGSIEPGTTVTVKWRGKPVFIRRRTEDDIKLANSVD 191
Query: 413 VDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAGEFGGYYCPCHGSHYDASGRIRK 234
V +LRDPQ D R +NP+WL+V+GVCTHLGC+P+ NAG++GG++CPCHGSHYD SGRIRK
Sbjct: 192 VGSLRDPQEDSVRVKNPEWLIVVGVCTHLGCIPLPNAGDYGGWFCPCHGSHYDISGRIRK 251
Query: 233 GPAPLNLEVPPHTFMDEGLLVVG 165
GPAP NLEVP ++F++E L++G
Sbjct: 252 GPAPYNLEVPTYSFLEENKLLIG 274
>At4g03280.2 68417.m00448 cytochrome B6-F complex iron-sulfur
subunit, chloroplast / Rieske iron-sulfur protein /
plastoquinol-plastocyanin reductase (petC) identical to
gi:9843639; identical to cDNA rieske iron-sulfur protein
precursor (petC) GI:5725449
Length = 210
Score = 64.9 bits (151), Expect = 4e-11
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Frame = -2
Query: 371 QNPKWLVVIG---VCTHLGCVPVANAGEFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPP 201
+N K L G VCTHLGCV N E + CPCHGS Y+A GR+ +GPAPL+L +
Sbjct: 124 ENDKTLATYGINAVCTHLGCVVPWNKAE-NKFLCPCHGSQYNAQGRVVRGPAPLSLAL-A 181
Query: 200 HTFMDE 183
H +DE
Sbjct: 182 HADIDE 187
>At4g03280.1 68417.m00447 cytochrome B6-F complex iron-sulfur
subunit, chloroplast / Rieske iron-sulfur protein /
plastoquinol-plastocyanin reductase (petC) identical to
gi:9843639; identical to cDNA rieske iron-sulfur protein
precursor (petC) GI:5725449
Length = 229
Score = 64.9 bits (151), Expect = 4e-11
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Frame = -2
Query: 371 QNPKWLVVIG---VCTHLGCVPVANAGEFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPP 201
+N K L G VCTHLGCV N E + CPCHGS Y+A GR+ +GPAPL+L +
Sbjct: 143 ENDKTLATYGINAVCTHLGCVVPWNKAE-NKFLCPCHGSQYNAQGRVVRGPAPLSLAL-A 200
Query: 200 HTFMDE 183
H +DE
Sbjct: 201 HADIDE 206
>At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 433
Score = 31.5 bits (68), Expect = 0.44
Identities = 23/81 (28%), Positives = 32/81 (39%)
Frame = -2
Query: 449 TADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAGEFGGYYCPCH 270
TAD + + VP++ P R ++ K V C H C G CP H
Sbjct: 227 TAD-LKHDTMVPIECFEQPWVIF-RGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYH 284
Query: 269 GSHYDASGRIRKGPAPLNLEV 207
G Y G +K P+ L+V
Sbjct: 285 GWEYSTDGECKKMPSTKLLKV 305
>At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 511
Score = 31.5 bits (68), Expect = 0.44
Identities = 23/81 (28%), Positives = 32/81 (39%)
Frame = -2
Query: 449 TADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAGEFGGYYCPCH 270
TAD + + VP++ P R ++ K V C H C G CP H
Sbjct: 227 TAD-LKHDTMVPIECFEQPWVIF-RGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYH 284
Query: 269 GSHYDASGRIRKGPAPLNLEV 207
G Y G +K P+ L+V
Sbjct: 285 GWEYSTDGECKKMPSTKLLKV 305
>At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 536
Score = 31.5 bits (68), Expect = 0.44
Identities = 23/81 (28%), Positives = 32/81 (39%)
Frame = -2
Query: 449 TADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAGEFGGYYCPCH 270
TAD + + VP++ P R ++ K V C H C G CP H
Sbjct: 227 TAD-LKHDTMVPIECFEQPWVIF-RGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYH 284
Query: 269 GSHYDASGRIRKGPAPLNLEV 207
G Y G +K P+ L+V
Sbjct: 285 GWEYSTDGECKKMPSTKLLKV 305
>At5g54370.1 68418.m06770 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein (GI:1350543)[Picea
glauca]
Length = 337
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 513 NSRRKVCHLQMERKTIVYPSQDSRRNLDREGCAC 412
NS+ KVC+ +R T + + N +R G AC
Sbjct: 54 NSKNKVCYADCDRPTCKSQCRMRKPNCNRPGSAC 87
>At4g01930.1 68417.m00257 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 652
Score = 27.9 bits (59), Expect = 5.5
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -1
Query: 603 CXICGHPLCVINVSGC*CFGFSQD*NQAG*NSRRKVCH-LQMERKTIV 463
C C HP+C+ + GC F N AG RR H L ER T+V
Sbjct: 396 CSACTHPICLQSFYGCMDCDFILHQNCAG--FRRMKWHVLHNERLTLV 441
>At1g27100.1 68414.m03303 expressed protein contains Pfam profile:
PF04601 protein of unknown function (DUF569
Length = 519
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -3
Query: 244 ESAKAPPPST*KCPPTRSWTKA 179
ESAKAPPP T PP R T +
Sbjct: 384 ESAKAPPPKTTSPPPHRRPTSS 405
>At4g29890.1 68417.m04253 choline monooxygenase, putative (CMO-like)
similar to Choline monooxygenase, chloroplast precursor
(EC 1.14.15.7) from {Amaranthus tricolor} SP|Q93XE1,
{Beta vulgaris} SP|O22553; contains Pfam Rieske [2Fe-2S]
domain PF00355
Length = 422
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/71 (25%), Positives = 27/71 (38%)
Frame = -2
Query: 446 ADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAGEFGGYYCPCHG 267
+D+I + L D R +N K VC+H + + G + C HG
Sbjct: 102 SDQIKESRDFFTGRLGDVDFVVCRDENGKIHAFHNVCSHHASILASGNGRKSCFVCLYHG 161
Query: 266 SHYDASGRIRK 234
Y SG + K
Sbjct: 162 WTYSLSGSLVK 172
>At4g01920.1 68417.m00255 DC1 domain-containing protein similar to
A. thaliana CHP-rich proteins
Length = 658
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = -1
Query: 603 CXICGHPLCVINVSGC*CFGFSQD*NQAG*NSRRKVCHLQMERKTIV 463
C C HP+C+ + GC F N AG R K L ER T+V
Sbjct: 400 CKACTHPICLQSFYGCMDCNFILHQNCAG-FLRMKWHVLHNERLTLV 445
>At4g01910.1 68417.m00251 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 651
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -1
Query: 603 CXICGHPLCVINVSGC*CFGFSQD*NQAG*NSRRKVCHLQMERKTIV 463
C C HP+C+ + GC F N AG R++ L ER T+V
Sbjct: 397 CRACTHPICLQSFYGCMDCDFILHQNCAG-FPRKRWHVLHNERLTLV 442
>At1g47570.1 68414.m05281 zinc finger (C3HC4-type RING finger)
family protein contains Pfam PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 466
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -2
Query: 293 GGYYCPCHGSHYDASGRIRKGPAPLNLEVPPH 198
GGY C HG+H P NL+VP H
Sbjct: 264 GGYRCEHHGAHLQCHLCQGMMPFRANLQVPLH 295
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,495,726
Number of Sequences: 28952
Number of extensions: 286986
Number of successful extensions: 731
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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