Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B01
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    31   0.14 
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    29   0.77 
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    27   4.1  
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    27   4.1  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    27   4.1  

>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 17/80 (21%), Positives = 37/80 (46%)
 Frame = -3

Query: 445  EKQHILKMMKCGSENEKKQXAPVKQEKTEKSNDETAADCIIVANKAIDVDTAIDLLTQAI 266
            +K+H +         E+ +  P K+ K + S D+TAAD  +   +  +  ++   +   I
Sbjct: 1830 KKRHNIDSANLSRGTERDEDIPNKRAKNKVSTDQTAADNKVTKPRLDESSSSKQDVLNKI 1889

Query: 265  DEEDVAEITDEGSXTAEVSK 206
            DE ++ + + +     E +K
Sbjct: 1890 DESEIEQASSKKPGYVEKNK 1909


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
 Frame = -3

Query: 538 SPELYCEICKTSMTCSEQMTMHLNGKRH---LTKEKQHILKMMKCGSENEKKQXAP 380
           S  + C +C  +     Q+  H N K+H   L K  Q I K  K   +N +    P
Sbjct: 267 SNPIMCMVCNKNFRSQNQLENHENSKKHKKNLRKMNQEIKKHAKEAQKNAESNKQP 322


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = +1

Query: 40  PFKVLHQGHL--PSCRFRC-PNRNR 105
           P+KV+H  HL  P  RFR  PN +R
Sbjct: 125 PYKVIHAAHLTKPQLRFRVQPNNSR 149


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
 Frame = -3

Query: 409 SENEKKQXAPVKQEKTEK--SNDETAADCIIVANKAIDVDTAIDLLTQAID--EEDVAEI 242
           SE EK +   ++ E   K   ND+T    + VA+    VD  +D   +A+D  E++++++
Sbjct: 2   SEEEKAELENMQVESEAKTSENDQTIDTKVDVADVTTHVDEDLDNKEEALDFSEDELSDL 61

Query: 241 TDEGSXTAEVSK 206
            +      + SK
Sbjct: 62  DENQFENFDESK 73


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = -3

Query: 802 QKEIPLKSXELY--CELCDVHITSKSHADSHYAGRPHR 695
           Q E   K  E Y  CE+C+    S+    SH A + HR
Sbjct: 58  QNEEVQKKAEFYQNCEVCNKKFYSEGAYSSHMASKKHR 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,507,015
Number of Sequences: 5004
Number of extensions: 40773
Number of successful extensions: 145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)