Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B01
         (804 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)                 46   3e-05
SB_11801| Best HMM Match : DEAD (HMM E-Value=5e-05)                    36   0.038
SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07)                    34   0.16 
SB_45490| Best HMM Match : zf-U1 (HMM E-Value=0.51)                    31   1.1  
SB_21190| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     31   1.4  
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)                    30   2.5  
SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_19806| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_44561| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)               29   5.8  
SB_41186| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)
          Length = 1011

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 6/113 (5%)
 Frame = -3

Query: 775 ELYCELCDVHITSKSHADSHYAGRPHRAVVE--GRKKPXNTILCQKSMEGRLEQ---LIR 611
           + +C LC     S+  ADSHY+G+ H   V+    +        ++  +  LE+   + +
Sbjct: 619 DTHCPLCKKWFNSRVQADSHYSGKAHLTQVDLYNMQPKFKKTKEEEEFDKLLEEADAMTQ 678

Query: 610 REKKNLKPIXXXXXXXXXXEAKPISPELY-CEICKTSMTCSEQMTMHLNGKRH 455
           +E KN+K I            K +  +LY CE C  ++   +QM+ HL G RH
Sbjct: 679 QEVKNVKNI---------KLGKNVKTQLYTCEPCNITLNSQKQMSQHLLGLRH 722



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 29/119 (24%), Positives = 46/119 (38%)
 Frame = -3

Query: 802 QKEIPLKSXELYCELCDVHITSKSHADSHYAGRPHRAVVEGRKKPXNTILCQKSMEGRLE 623
           +++ P  +    CE+C V + S S A  H+ G+ H   V         +L Q S      
Sbjct: 544 KRKAPSDNKLYICEICHVELNSASQAFQHFQGKAHLGKVR--------VLEQASE----- 590

Query: 622 QLIRREKKNLKPIXXXXXXXXXXEAKPISPELYCEICKTSMTCSEQMTMHLNGKRHLTK 446
             + +  K  KP               + P+ +C +CK       Q   H +GK HLT+
Sbjct: 591 --VTQPPKPAKPFTPHLKPPKPKPGSHLDPDTHCPLCKKWFNSRVQADSHYSGKAHLTQ 647



 Score = 37.5 bits (83), Expect = 0.013
 Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 6/113 (5%)
 Frame = -3

Query: 775  ELY-CELCDVHITSKSHADSHYAGRPHRAVV-EGRKKPXNTILCQKSMEG----RLEQLI 614
            +LY CE C++ + S+     H  G  H+ VV + +  P  T     + EG    +L   +
Sbjct: 696  QLYTCEPCNITLNSQKQMSQHLLGLRHKIVVGKAQPPPPPTPGESATWEGHRYKKLATTL 755

Query: 613  RREKKNLKPIXXXXXXXXXXEAKPISPELYCEICKTSMTCSEQMTMHLNGKRH 455
              +     P+            K    + YC+ C  SM   +QM  H+   RH
Sbjct: 756  LTKASQQSPLTPSCQALSPGGTK--MGQYYCQDCDISMNSIKQMEQHMTSARH 806



 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -3

Query: 784 KSXELYCELCDVHITSKSHADSHYAGRPHRAVVEGRKKPXN 662
           K  + YC+ CD+ + S    + H     HR  ++G  K  N
Sbjct: 778 KMGQYYCQDCDISMNSIKQMEQHMTSARHRDGLKGGAKRKN 818


>SB_11801| Best HMM Match : DEAD (HMM E-Value=5e-05)
          Length = 1442

 Score = 35.9 bits (79), Expect = 0.038
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 769 YCELCDVHITSKSHADSHYAGRPH-RAVVEGRKKP 668
           +CE C VH+ SKS A  H+A   H + + + +K P
Sbjct: 861 FCEYCKVHLNSKSQAQEHFASTRHAQTMAKSQKAP 895



 Score = 30.7 bits (66), Expect = 1.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 784 KSXELYCELCDVHITSKSHADSHYAGRPHR 695
           K+  + C LC + +TSK   D H+    H+
Sbjct: 818 KADSIICSLCKISLTSKELVDEHFQSTKHK 847


>SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07)
          Length = 844

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 11/116 (9%)
 Frame = -3

Query: 523 CEICKTSMTCSEQMTMHLNGKRHL-----TKEKQHILKMMKCGSENEK----KQXAPVKQ 371
           C++CK          MHL+GK+H+     ++ K    +M K  +  EK        P K 
Sbjct: 359 CKVCKIMCNKEHAFRMHLHGKKHVKTWLESQGKSFESEMFKKAALKEKATAEASETPTKS 418

Query: 370 EKTEKSND-ETAADCIIVANKAIDVDTAIDLLTQAIDEED-VAEITDEGSXTAEVS 209
           ++T+ S   ET+ +       AID  +A D     + +ED   EI  E +   E S
Sbjct: 419 KETDSSEKMETSKEEAEQQKTAIDDASAGDEEKTEVKKEDATVEIQKERTEEEESS 474


>SB_45490| Best HMM Match : zf-U1 (HMM E-Value=0.51)
          Length = 477

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 784 KSXELYCELCDVHITSKSHADSHYAGRPHRAVVEGRKKP 668
           K    +C+LC+      +  D+H AGR HR   + + +P
Sbjct: 128 KVVNFHCKLCECKFNDPNAKDAHLAGRRHRLQYKKKVQP 166


>SB_21190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 784 KSXELYCELCDVHITSKSHADSHYAGRPHRAVVEGRKKP 668
           K    +C+LC+      +  D+H AGR HR   + + +P
Sbjct: 128 KVVNFHCKLCECKFNDPNAKDAHLAGRRHRLQYKKKVQP 166


>SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1741

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
 Frame = -3

Query: 535  PELYCEICKTSMTCSEQMTMHLNGKRHLTKEKQHILKMMKCGSEN---EKKQXAPVKQEK 365
            P  YC IC  + T S  +T H   K H  K K    K++   +++   E +Q  P K E 
Sbjct: 1058 PAYYCSICGATFTKSLTLTRH-QRKSHRKKNKVTREKLLSAANKDNLTENEQTFP-KPES 1115

Query: 364  TEKSNDETAADCIIVANK 311
             E     T   C I   K
Sbjct: 1116 IECEGAFTCKKCQISFEK 1133


>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
          Length = 3368

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/59 (23%), Positives = 31/59 (52%)
 Frame = -3

Query: 409  SENEKKQXAPVKQEKTEKSNDETAADCIIVANKAIDVDTAIDLLTQAIDEEDVAEITDE 233
            S+ E+K+  P+K+   +  ND   +  +  A K +D+   ++++ +   E D  +I +E
Sbjct: 3290 SKEEEKKKIPLKKITRKVPNDREISSYLREARKKVDMKRRLEVIERDWGESDEDDINEE 3348


>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1323

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -3

Query: 514 CKTSMTCSEQMTMHLNGKRHLTKEKQHILKMMKCGSENE-KKQXAPVKQEKTEKSNDET 341
           C++S +C E        K+   KEKQ         SE++ K++   VK++K +K+ D +
Sbjct: 158 CESS-SCEESSDSEKRLKKEKNKEKQRDSSESSSDSEDDRKRRKKKVKKDKKQKAKDSS 215


>SB_19806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -3

Query: 472 LNGKRHLTKEKQHILKMMKCGSENEKKQXAPVKQEKTEK 356
           LNGKR +T+    + + ++   EN+ ++   + +E T+K
Sbjct: 196 LNGKRKMTRSFSPLKEFLRPADENDSRKDIKLGEENTDK 234


>SB_44561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -3

Query: 424 MMKCGSENEKKQXAPVKQEKTEKSNDETAADCIIVANKAIDVDTAIDLL 278
           M+KCG E        + + KT  + DETA      A KA  V   + L+
Sbjct: 1   MLKCGLEKHSSIHTYISRAKTGPNKDETAVHGCRTARKAFFVLLLVALI 49


>SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)
          Length = 523

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = -3

Query: 532 ELYCEICKTSMTCSEQMTMHLNGKRHLTKEKQHILKMMKCGSENEKKQXAPVKQEKTE 359
           +L C+ C            HLNGK+H        + +    +E ++K  + VK +KT+
Sbjct: 317 DLLCKTCNMYFNSPHNKREHLNGKKHQ-------MMLNTAAAEKKEKLSSSVKDKKTD 367


>SB_41186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = -3

Query: 526 YCEICKTSMTCSEQMTMHLNGKRHLTKEKQHILKMMKCGSENEKKQXAPVKQEKTEKSND 347
           YC +C   +  S     H+NGK+H  +    +   ++  S ++ K+     + K E+   
Sbjct: 83  YCNVCDCVVKDSINFLDHINGKKH--QRNMGMSMRVERSSLDQVKRRFETNKRKREEEKK 140

Query: 346 ETAAD 332
           +T  D
Sbjct: 141 KTEYD 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,375,766
Number of Sequences: 59808
Number of extensions: 329038
Number of successful extensions: 1133
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)