Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B01
         (804 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    27   0.68 
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    26   1.6  
AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering In...    25   2.1  

>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 27.1 bits (57), Expect = 0.68
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = -3

Query: 769 YCELCDVHIT--SKSHADSHYAGRPHR 695
           YC+ CD ++T  S S   +H  GR H+
Sbjct: 5   YCDYCDTYLTHDSPSVRKTHCTGRKHK 31



 Score = 25.8 bits (54), Expect = 1.6
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -3

Query: 535 PELYCEICKTSMTCSEQMT--MHLNGKRHLTKEKQHILKMMK 416
           P+ YC+ C T +T         H  G++H    K +  K M+
Sbjct: 2   PKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWME 43


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
 Frame = +1

Query: 67  LPSCRFRCPN--RNRLRPPSVPQH 132
           LPSCR  CPN        P+ P+H
Sbjct: 101 LPSCRLPCPNLIPRPAEVPTTPEH 124


>AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering
           Institute proto-oncogeneproduct protein.
          Length = 358

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 748 HITSKSHADSHYAGRP 701
           H+ S+ HA SH+AG P
Sbjct: 57  HLASQHHALSHHAGEP 72


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 646,854
Number of Sequences: 2352
Number of extensions: 12059
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 84823812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)