Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_B01
(804 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 38 0.008
At1g74250.1 68414.m08599 DNAJ heat shock N-terminal domain-conta... 34 0.096
At5g61190.1 68418.m07676 zinc finger protein-related contains Pf... 31 0.90
At2g24500.1 68415.m02927 zinc finger (C2H2 type) family protein ... 31 0.90
At2g19385.1 68415.m02261 expressed protein weak similarity to Ce... 31 1.2
At5g61180.1 68418.m07675 hypothetical protein contains Pfam prof... 30 2.1
At5g23890.1 68418.m02806 expressed protein weak similarity to SP... 29 2.7
At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc... 29 4.8
At5g26610.2 68418.m03181 D111/G-patch domain-containing protein ... 29 4.8
At5g26610.1 68418.m03180 D111/G-patch domain-containing protein ... 29 4.8
At3g02860.2 68416.m00279 expressed protein 29 4.8
At3g02860.1 68416.m00278 expressed protein 29 4.8
At2g24030.2 68415.m02870 expressed protein and genefinder 29 4.8
At2g24030.1 68415.m02871 expressed protein and genefinder 29 4.8
At1g12270.1 68414.m01419 stress-inducible protein, putative simi... 29 4.8
At2g38440.1 68415.m04721 expressed protein 28 6.3
At1g62740.1 68414.m07081 stress-inducible protein, putative simi... 28 6.3
At3g59330.1 68416.m06615 anthocyanin-related membrane protein fa... 28 8.3
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 37.9 bits (84), Expect = 0.008
Identities = 23/105 (21%), Positives = 39/105 (37%)
Frame = -3
Query: 769 YCELCDVHITSKSHADSHYAGRPHRAVVEGRKKPXNTILCQKSMEGRLEQLIRREKKNLK 590
+C LCD++ TS+ +H G+ HR VE + E + Q + + K
Sbjct: 155 FCSLCDINATSEQTLLAHANGKKHRVKVE-----------RFDAEQQKRQSTQHSTVDKK 203
Query: 589 PIXXXXXXXXXXEAKPISPELYCEICKTSMTCSEQMTMHLNGKRH 455
+C +C TC + + H NG++H
Sbjct: 204 DYSKQQIEVDINVGLSNCYPWFCSLCNVKATCQQNLLSHANGRKH 248
Score = 33.9 bits (74), Expect = 0.13
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -3
Query: 550 AKPISPELYCEICKTSMTCSEQMTMHLNGKRHLTKEKQ 437
A+ + + +C +C +MTC + H+ GK+H K +
Sbjct: 78 AELFNSQWFCSLCNATMTCEQDYFAHVYGKKHQEKANE 115
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 769 YCELCDVHITSKSHADSHYAGRPHRAVVE 683
+C LC+V T + + SH GR HR VE
Sbjct: 225 FCSLCNVKATCQQNLLSHANGRKHRENVE 253
Score = 29.9 bits (64), Expect = 2.1
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = -3
Query: 526 YCEICKTSMTCSEQMTMHLNGKRHLTKEKQHILKMMK 416
+C +C + T + + H NGK+H K ++ + K
Sbjct: 155 FCSLCDINATSEQTLLAHANGKKHRVKVERFDAEQQK 191
>At1g74250.1 68414.m08599 DNAJ heat shock N-terminal
domain-containing protein contains Pfam domains PF00226:
DnaJ domain and PF00096: Zinc finger, C2H2 type
Length = 630
Score = 34.3 bits (75), Expect = 0.096
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 2/114 (1%)
Frame = -3
Query: 550 AKPISPELYCEICKTSMTCSEQMTMHLNGKRHLTKEKQHILKMMKCGSENEKKQ-XAPVK 374
AK + +LYC +C +Q H K+H K + ENE+++ P+
Sbjct: 301 AKRKNEQLYCIVCSKKFKSEKQWKNHEQSKKHKEKVAELRESFTDYEEENEEEEIDGPLD 360
Query: 373 QEKTEKSNDETAADCIIVANKAIDV-DTAIDLLTQAIDEEDVAEITDEGSXTAE 215
++ + E + + + N+ DV + + DE VAE +GS +E
Sbjct: 361 SPESVEELHEKLQEELNIDNEERDVKKEVVGEADETDDEYFVAEEDMQGSSESE 414
>At5g61190.1 68418.m07676 zinc finger protein-related contains Pfam
profile PF04396: Protein of unknown function DUF537,
weak hit to PF00096: Zinc finger C2H2 type
Length = 977
Score = 31.1 bits (67), Expect = 0.90
Identities = 40/182 (21%), Positives = 73/182 (40%), Gaps = 2/182 (1%)
Frame = -3
Query: 772 LYCELCDVHITSKSHADSHYAGRPHRAVVEGRKKPXNTILCQKSMEGRLEQLIRREKKNL 593
L C++C + T+ +H G+ HR +E + IL + + +++ + N
Sbjct: 297 LLCKVCQISFTNNDTYKNHTYGKKHRNNLELQSGKSKNILVGPAEPSK--EVLEKHNMNK 354
Query: 592 KPIXXXXXXXXXXEAKPISPELYCEICKTSMTCSEQMTM--HLNGKRHLTKEKQHILKMM 419
K + + E C +C ++ C Q+ HL GK+H Q +
Sbjct: 355 KVM--------IESRAQANAEFVCLMC--NVVCQSQIVFNSHLRGKKHANMLSQSEATLD 404
Query: 418 KCGSENEKKQXAPVKQEKTEKSNDETAADCIIVANKAIDVDTAIDLLTQAIDEEDVAEIT 239
+ + K Q V EK + S ET A+ + + KA + + L +D + + E
Sbjct: 405 QALIVSTKLQEKGV-GEKEQPS--ETVAELQLQSQKAQEKQVPMVL----VDSKKLPEKG 457
Query: 238 DE 233
DE
Sbjct: 458 DE 459
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = -3
Query: 790 PLKSXE----LYCELCDVHITSKSHADSHYAGRPHRAVVEGRKKPXNTI 656
PLK E ++C++C + SK SH G+ HR +E + T+
Sbjct: 672 PLKEPEGLQPVWCQVCQISCNSKVAFASHTYGKKHRQNLESQSAKNETM 720
>At2g24500.1 68415.m02927 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 395
Score = 31.1 bits (67), Expect = 0.90
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
Frame = -3
Query: 538 SPELY-CEICKTSMTCSEQMTMHLNGKRHLTKEKQHILKMMKCGSENEK---KQXAPVKQ 371
+P LY C IC S+ HL K K H+LK E +K KQ P +
Sbjct: 64 APMLYSCGICNKGYRSSKAHEQHL-------KSKSHVLKASTSTGEEDKAIIKQLPPRRV 116
Query: 370 EKTEKSNDETAADCIIVANKAIDVDTAIDLLTQAIDEEDVAEITDEG 230
EK + + + + ++ I+VD+ DL + ++ + ++ ++G
Sbjct: 117 EKNNTAQLKGSIEEEESEDEWIEVDSDEDLDAEMNEDGEEEDMDEDG 163
>At2g19385.1 68415.m02261 expressed protein weak similarity to Cell
growth regulating nucleolar protein (Swiss-Prot:Q08288)
[Mus musculus]
Length = 275
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 526 YCEICKTSMTCSEQMTMHLNGKRHLTKEK 440
+C +C T T + + H +GK+H K K
Sbjct: 96 FCSLCNTKATSQQTLLAHADGKKHRGKAK 124
>At5g61180.1 68418.m07675 hypothetical protein contains Pfam profile
PF04396: Protein of unknown function, DUF537
Length = 346
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -3
Query: 526 YCEICKTSMTCSEQMTMHLNGKRHLTKEKQHILKMMK 416
+CE+C S + + +T HL+G+RH +L +++
Sbjct: 286 FCELCNVSCS-NHDLTAHLSGRRHRANPVDALLSVIQ 321
>At5g23890.1 68418.m02806 expressed protein weak similarity to
SP|P12957 Caldesmon (CDM) {Gallus gallus}
Length = 946
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/50 (36%), Positives = 31/50 (62%)
Frame = -3
Query: 376 KQEKTEKSNDETAADCIIVANKAIDVDTAIDLLTQAIDEEDVAEITDEGS 227
+QE +S+DE ++D I VAN ++ + ++I+ DVA+ +DEGS
Sbjct: 131 QQESMIQSSDEISSDEIKVANSE---ESNLKDEDKSIESNDVAQKSDEGS 177
>At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1
nuclear gene encoding mitochondrial protein - Homo
sapiens, EMBL:AF026849 contains Pfam profile: ATPase
family PF00004
Length = 470
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = -3
Query: 358 KSNDETAADCIIVANKAIDVDTAIDLLTQAIDEED 254
K + A+ ++ N+ IDVD +++LL A++EE+
Sbjct: 418 KISPADVAENLMARNQQIDVDKSLNLLISALEEEN 452
>At5g26610.2 68418.m03181 D111/G-patch domain-containing protein
contains Pfam PF01585: G-patch domain
Length = 301
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -3
Query: 547 KPISPELYCEICKTSMTCSEQMTMHLNGKRHLTKEKQHILKMMKCGS-ENEKKQXAPVKQ 371
K I YCE+C + HL+ H K++ +K M S +E+K+ +Q
Sbjct: 155 KEIRKVFYCELCSKQYRTVMEFEGHLSSYDHNHKKRFKEMKEMHGASGRDERKKREQQRQ 214
Query: 370 EK 365
E+
Sbjct: 215 ER 216
>At5g26610.1 68418.m03180 D111/G-patch domain-containing protein
contains Pfam PF01585: G-patch domain
Length = 301
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -3
Query: 547 KPISPELYCEICKTSMTCSEQMTMHLNGKRHLTKEKQHILKMMKCGS-ENEKKQXAPVKQ 371
K I YCE+C + HL+ H K++ +K M S +E+K+ +Q
Sbjct: 155 KEIRKVFYCELCSKQYRTVMEFEGHLSSYDHNHKKRFKEMKEMHGASGRDERKKREQQRQ 214
Query: 370 EK 365
E+
Sbjct: 215 ER 216
>At3g02860.2 68416.m00279 expressed protein
Length = 313
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 784 KSXELYCELCDVHITSKSHADSHYAGRPHRAVVEGRK 674
+S + C +C+V + S+S D H A R H ++ K
Sbjct: 33 ESDQPVCRVCNVVLKSESLWDVHQASRKHHEAIDSLK 69
>At3g02860.1 68416.m00278 expressed protein
Length = 312
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 784 KSXELYCELCDVHITSKSHADSHYAGRPHRAVVEGRK 674
+S + C +C+V + S+S D H A R H ++ K
Sbjct: 33 ESDQPVCRVCNVVLKSESLWDVHQASRKHHEAIDSLK 69
>At2g24030.2 68415.m02870 expressed protein and genefinder
Length = 374
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = -3
Query: 784 KSXELYCELCDVHITSKSHADSHYAGRPHRAVVEGRKKPXNTI 656
K ++C+ C++ S+ +H G+ H A++E ++ T+
Sbjct: 300 KKETVWCKTCNIQTNSEQTMRNHTLGKKHMALLEKQQNKLITV 342
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 532 ELYCEICKTSMTCSEQMTMHLNGKRH 455
+ +CEICK C M H GK+H
Sbjct: 212 KFWCEICKVGTYCQIVMRDHELGKKH 237
>At2g24030.1 68415.m02871 expressed protein and genefinder
Length = 455
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = -3
Query: 784 KSXELYCELCDVHITSKSHADSHYAGRPHRAVVEGRKKPXNTI 656
K ++C+ C++ S+ +H G+ H A++E ++ T+
Sbjct: 381 KKETVWCKTCNIQTNSEQTMRNHTLGKKHMALLEKQQNKLITV 423
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 532 ELYCEICKTSMTCSEQMTMHLNGKRH 455
+ +CEICK C M H GK+H
Sbjct: 293 KFWCEICKVGTYCQIVMRDHELGKKH 318
>At1g12270.1 68414.m01419 stress-inducible protein, putative similar
to sti (stress inducible protein) [Glycine max]
GI:872116; contains Pfam profile PF00515 TPR Domain
Length = 572
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = -3
Query: 406 ENEKKQXAPVKQEKTEKSNDETAADCIIVANKAI---DVDTAIDLLTQAI--DEEDVAEI 242
E E + V +EK +K E A + N A D +TAI + AI D+ED++ +
Sbjct: 222 EPEPEPEPEVTEEKEKKERKEKAKKEKELGNAAYKKKDFETAIQHYSTAIEIDDEDISYL 281
Query: 241 TDEGSXTAEVSK 206
T+ + E+ K
Sbjct: 282 TNRAAVYLEMGK 293
>At2g38440.1 68415.m04721 expressed protein
Length = 1399
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = -3
Query: 352 NDETAADCIIVANKAIDVDTAIDLLTQAIDEEDVAEITDEGSXTAEVS 209
+DET DC+ V N +DVD+ + + + VA+I D S AE+S
Sbjct: 717 DDET--DCVSVTNVVVDVDSK-NSVADVGSQSSVADI-DSQSSVAEIS 760
>At1g62740.1 68414.m07081 stress-inducible protein, putative similar
to sti (stress inducible protein) [Glycine max]
GI:872116; contains Pfam profile PF00515 TPR Domain
Length = 571
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = -3
Query: 406 ENEKKQXAPVKQEKTEKSNDETAADCIIVANKAIDVDTAIDLLTQA--IDEEDVAEITDE 233
E E + +EK +K + + A K D +TAI + A ID+ED++ IT+
Sbjct: 224 EPEPEPEPEFGEEKQKKLKAQKEKELGNAAYKKKDFETAIQHYSTAMEIDDEDISYITNR 283
Query: 232 GSXTAEVSK 206
+ E+ K
Sbjct: 284 AAVHLEMGK 292
>At3g59330.1 68416.m06615 anthocyanin-related membrane protein
family similar to anthocyanin-related membrane protein 1
(GI:16416383), anthocyanin-related membrane protein 2
(GI:16416385), anthocyanin-related membrane protein 3
(GI:16416387) [Arabidopsis thaliana]
Length = 241
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 390 CFFSFSDPHFIIFRMCCFSLVRWRL-PLRCIVICSEQVMEVLHISQYSSGD 539
C+ + D I F C F + ++RL + +VIC+ V+ V+ S +GD
Sbjct: 116 CYLTIYDEILIRFYSCAFLVTKYRLMKISGVVICNVGVVMVV-FSDVHAGD 165
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,527,291
Number of Sequences: 28952
Number of extensions: 232071
Number of successful extensions: 828
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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