Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_A23
         (513 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58760.1 68418.m07360 transducin family protein / WD-40 repea...    30   1.1  
At3g55710.1 68416.m06189 UDP-glucoronosyl/UDP-glucosyl transfera...    27   5.6  
At1g11350.1 68414.m01303 S-locus lectin protein kinase family pr...    27   5.6  
At5g67470.1 68418.m08507 formin homology 2 domain-containing pro...    27   7.4  
At3g54630.1 68416.m06044 expressed protein weak similarity to re...    27   7.4  
At2g32290.1 68415.m03947 beta-amylase, putative / 1,4-alpha-D-gl...    27   7.4  
At5g04970.1 68418.m00526 pectinesterase, putative contains simil...    27   9.8  

>At5g58760.1 68418.m07360 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           damage-specific DNA binding protein 2 (GI:10798819)
           [Homo sapiens]
          Length = 557

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = -2

Query: 371 HCSFKSTGSTIPCSTHSPTTGGGSCNPVQYQPVLDCDRRSLCRTW 237
           H +  STG  I          G  CNPVQ + +L C      R W
Sbjct: 296 HRTNNSTGEPILIHKQGSKVCGLDCNPVQPELLLSCGNDHFARIW 340


>At3g55710.1 68416.m06189 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 464

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 361 SNLQAPLFPVAPIALQRVEVP 299
           S LQ PLFP+ P    R ++P
Sbjct: 226 SKLQVPLFPIGPFHKHRTDLP 246


>At1g11350.1 68414.m01303 S-locus lectin protein kinase family
           protein contains Serine/Threonine protein kinases
           active-site signature, PROSITE:PS00108
          Length = 830

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +3

Query: 258 SVTVENWLVLYWITGTSTRCRAMGATGNSGACRFEAAMSLP 380
           +V ++ W    W+   ST+C      G   +CRF    + P
Sbjct: 270 NVAIQEWKT--WLKVPSTKCDTYATCGQFASCRFNPGSTPP 308


>At5g67470.1 68418.m08507 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 899

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -3

Query: 286 NTNQFSTVTEEACAAPGKRNLMPGTNTPYPPVP 188
           N   F  +T+E    P  R   P   TP PP P
Sbjct: 352 NRAAFQAITQEKSPVPPPRRSPPPLQTPPPPPP 384


>At3g54630.1 68416.m06044 expressed protein weak similarity to
           retinoblastoma-associated protein HEC [Homo sapiens]
           GI:2501873
          Length = 568

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 244 APGKRNLMPGTNTPYPPVPENIRRKQELF-QRDNDLPVFLKGGPADV 107
           A GKR    G     PP P +I +++ LF  RD+D   F    P+ +
Sbjct: 5   AAGKRRTTVGFGGAPPPPPPSIEQQRHLFNSRDSDAS-FASSRPSSI 50


>At2g32290.1 68415.m03947 beta-amylase, putative /
           1,4-alpha-D-glucan maltohydrolase, putative similar to
           beta-amylase GI:13560977 from [Castanea crenata]
          Length = 577

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 11  LSCFLGLALGVDGLHYTYQSESAEKQSQTIQYNV 112
           L C L +A  V G+H+ Y++ES   +     YN+
Sbjct: 353 LGCKLKIAAKVSGIHWWYKTESHAAELTAGYYNL 386


>At5g04970.1 68418.m00526 pectinesterase, putative contains
           similarity to pectinesterase from Vitis vinifera
           GI:15081598, Prunus persica SP|Q43062; contains Pfam
           profile PF01095 pectinesterase
          Length = 624

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 319 LQRVEVPVIQYNTNQFSTVTEEACAAP 239
           L R  V V  Y T+ F T+TE   AAP
Sbjct: 303 LVREAVTVGPYETDNFPTITEAVAAAP 329


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,220,106
Number of Sequences: 28952
Number of extensions: 261659
Number of successful extensions: 705
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)