Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_A22
         (300 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch...    24   4.2  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    24   5.5  
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    24   5.5  
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch...    24   5.5  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    23   9.6  

>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
           Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 121 TVNGFWVGCDNYHNIT 168
           T NG    CDNY N+T
Sbjct: 24  TFNGHLENCDNYMNLT 39


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 63  FIIISYFCGYIKFHIFFSFNSKWI 134
           F   ++F G I F+IF  F  KW+
Sbjct: 118 FQFCAFFFGGIVFYIFNHFLHKWL 141


>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 81  FCGYIKFHIFFSFNSKWI 134
           + G +  H+FF  N KWI
Sbjct: 91  YLGPLVIHLFFILNYKWI 108


>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
           Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 146 QPTQNPFTVKTEKNMKFNITTKITNYD 66
           QP     T+K    +KFN T  +T+ D
Sbjct: 172 QPPNVTLTIKKNGGIKFNHTVPLTHMD 198


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 217 IKLFKNSSNGSIMITIT*YYDNC 149
           I +FK SS+ S+ +  T  Y NC
Sbjct: 660 IIMFKKSSDNSLRLAATGSYVNC 682


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,141,476
Number of Sequences: 5004
Number of extensions: 17870
Number of successful extensions: 31
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)