Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_A22
         (300 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,410...    27   3.6  
04_03_0181 - 12327281-12328620,12330922-12331015,12331079-123311...    26   6.3  
07_01_1150 - 10801742-10802161                                         25   8.3  

>01_01_0558 +
           4098383-4098510,4100462-4100572,4100765-4100853,
           4100974-4101107,4101337-4101435,4102619-4102994,
           4103883-4104337,4104419-4107409
          Length = 1460

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 127 NGFWVGCDNYHNIT*L*SLCFHYLN 201
           +GFW    NY  I  L  LC H++N
Sbjct: 783 DGFWNMSINYRRIINLRMLCLHHIN 807


>04_03_0181 -
           12327281-12328620,12330922-12331015,12331079-12331183,
           12331404-12332592,12333268-12333461
          Length = 973

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 184 CFHYLNF*KAL*ACRLVRYGK 246
           CF Y+ F  A+ AC L+R G+
Sbjct: 38  CFAYMRFLMAIVACALLRVGR 58


>07_01_1150 - 10801742-10802161
          Length = 139

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 113 EKNMKFNITTKITNYDKFYVSEFKLHIM 30
           EK  K N+T  ITN  K Y+++ + HI+
Sbjct: 32  EKAQKSNLT--ITNGPKMYITDLEAHIV 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,358,928
Number of Sequences: 37544
Number of extensions: 88168
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)