Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_A22
         (300 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ482733-1|ABF20556.1|  600|Caenorhabditis elegans SNF-3 protein.      27   1.9  
DQ118731-1|AAZ23105.1|  600|Caenorhabditis elegans sodium-couple...    27   1.9  
AF026211-1|AAB71293.2|  600|Caenorhabditis elegans Sodium:neurot...    27   1.9  
U53339-6|AAA96202.1|  348|Caenorhabditis elegans Serpentine rece...    27   2.5  
U23179-5|AAK68210.2|  347|Caenorhabditis elegans Serpentine rece...    26   4.4  
U23179-6|AAK68205.1|  341|Caenorhabditis elegans Serpentine rece...    26   5.8  
AF026209-14|AAB71280.1|  366|Caenorhabditis elegans Hypothetical...    26   5.8  
U80840-13|AAB37936.2|  182|Caenorhabditis elegans Hypothetical p...    25   7.6  

>DQ482733-1|ABF20556.1|  600|Caenorhabditis elegans SNF-3 protein.
          Length = 600

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 57  IKFIIISYFCGYIKFHIFFSFNS-KWILGW 143
           I F+ I+YFC  + + +F+  +S  W+  W
Sbjct: 118 IAFMCIAYFCVIVAWAMFYMISSIAWVFPW 147


>DQ118731-1|AAZ23105.1|  600|Caenorhabditis elegans sodium-coupled
           betaine transporterprotein protein.
          Length = 600

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 57  IKFIIISYFCGYIKFHIFFSFNS-KWILGW 143
           I F+ I+YFC  + + +F+  +S  W+  W
Sbjct: 118 IAFMCIAYFCVIVAWAMFYMISSIAWVFPW 147


>AF026211-1|AAB71293.2|  600|Caenorhabditis elegans
           Sodium:neurotransmitter symporterfamily protein 3
           protein.
          Length = 600

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 57  IKFIIISYFCGYIKFHIFFSFNS-KWILGW 143
           I F+ I+YFC  + + +F+  +S  W+  W
Sbjct: 118 IAFMCIAYFCVIVAWAMFYMISSIAWVFPW 147


>U53339-6|AAA96202.1|  348|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 12 protein.
          Length = 348

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 51  GNIKFIIISYFCGYIKFHIFFSF 119
           GN+KF+++SYF G   F     F
Sbjct: 54  GNLKFLLVSYFIGTFLFASIICF 76


>U23179-5|AAK68210.2|  347|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 2 protein.
          Length = 347

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 51  GNIKFIIISYFCGYIKFHIFFSF 119
           GNIKF+++ YF     F +  +F
Sbjct: 58  GNIKFLLVCYFSASFVFAVLLAF 80


>U23179-6|AAK68205.1|  341|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 1 protein.
          Length = 341

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 24  QIHYMXFEFGNIKFIIISYFCGYIKFHI 107
           QI  + F  GNIKF++ISYF     F +
Sbjct: 44  QIFPLPFH-GNIKFMLISYFLSAFLFAV 70


>AF026209-14|AAB71280.1|  366|Caenorhabditis elegans Hypothetical
           protein C05E4.12 protein.
          Length = 366

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 87  GYIKFHIFFSFN 122
           G IKFH+FF FN
Sbjct: 324 GIIKFHLFFEFN 335


>U80840-13|AAB37936.2|  182|Caenorhabditis elegans Hypothetical
           protein F08D12.13 protein.
          Length = 182

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 143 PTQNPFTVKTEKNMKFNITTKITNYDKF 60
           PTQ  F + T ++ K   T    +YD+F
Sbjct: 65  PTQPMFYISTVESTKHKFTVTTASYDRF 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,110,292
Number of Sequences: 27780
Number of extensions: 95776
Number of successful extensions: 187
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)