Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_A22
         (300 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03400.1 68417.m00462 auxin-responsive GH3 family protein sim...    29   0.58 
At3g23110.1 68416.m02913 disease resistance family protein conta...    28   1.3  
At3g23120.1 68416.m02914 leucine-rich repeat family protein cont...    26   5.4  
At5g11700.1 68418.m01367 glycine-rich protein predicted protein,...    25   7.1  
At5g54510.1 68418.m06787 auxin-responsive GH3 protein, putative ...    25   9.4  
At4g27260.1 68417.m03913 auxin-responsive GH3 family protein sim...    25   9.4  
At4g16900.1 68417.m02551 disease resistance protein (TIR-NBS-LRR...    25   9.4  

>At4g03400.1 68417.m00462 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 591

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 290 LWPNRKFI-IIIIXHALPYLTSLQAY 216
           LWPN KFI  I+    LPYL  L+ Y
Sbjct: 300 LWPNAKFISSIMTGSMLPYLNKLRHY 325


>At3g23110.1 68416.m02913 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 835

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 81  FCGYIKFHIFFSFNSKWIL 137
           FCG +  HIF S+  KW++
Sbjct: 802 FCGLVIGHIFTSYKHKWLM 820


>At3g23120.1 68416.m02914 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-5b GB:AAC78595
           [Lycopersicon esculentum] (Plant Cell 10, 1915-1926
           (1998);
          Length = 784

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 81  FCGYIKFHIFFSFNSKWIL 137
           FCG++  HIF S+   W +
Sbjct: 764 FCGFVIGHIFTSYKHLWFI 782


>At5g11700.1 68418.m01367 glycine-rich protein predicted protein,
            Arabidopsis thaliana
          Length = 1411

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = +3

Query: 33   YMXFEFGNIKFIIISYFCGYIKFHIFFSFNSK 128
            Y  + F ++  + +++ CGY+ +H   S + K
Sbjct: 1322 YALWNFMSLVNVFVAFLCGYVHYHSESSASKK 1353


>At5g54510.1 68418.m06787 auxin-responsive GH3 protein, putative
           (DFL-1) identical to auxin-responsive GH3 homologue
           [Arabidopsis thaliana] GI:11041726; similar to
           auxin-responsive GH3 product [Glycine max] GI:18591;
           contains Pfam profile PF03321: GH3 auxin-responsive
           promoter
          Length = 612

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 299 IVGLWPNRKFIIIIIXHAL-PYLTSLQAY 216
           I  LWPN K++ +I+   +  Y+ +L  Y
Sbjct: 299 ITRLWPNTKYVDVIVTGTMSQYIPTLDYY 327


>At4g27260.1 68417.m03913 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 612

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 299 IVGLWPNRKFIIIIIXHAL-PYLTSLQAY 216
           I  LWPN K++ +I+   +  Y+ +L  Y
Sbjct: 299 ITRLWPNTKYVDVIVTGTMSQYIPTLDYY 327


>At4g16900.1 68417.m02551 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1072

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 223 KLIKLFKNSSNGSIMITIT*YYDNCHNQ 140
           +++  F+N  NG IM T+   YD  H +
Sbjct: 391 EMMPRFRNGLNGDIMKTLRVSYDRLHQK 418


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,564,335
Number of Sequences: 28952
Number of extensions: 82557
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)