Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_A19
(726 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 220 2e-58
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 219 2e-58
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar... 48 1e-06
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom... 27 3.6
SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar... 26 6.3
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces... 26 6.3
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 8.3
>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 220 bits (537), Expect = 2e-58
Identities = 103/131 (78%), Positives = 116/131 (88%)
Frame = -1
Query: 669 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 490
P SKTY PRRPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLTL+E
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64
Query: 489 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 310
KDPKRLFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHH
Sbjct: 65 KDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124
Query: 309 ARILIRQRHIR 277
AR+LI QRHIR
Sbjct: 125 ARVLIFQRHIR 135
Score = 74.9 bits (176), Expect = 1e-14
Identities = 31/41 (75%), Positives = 37/41 (90%)
Frame = -3
Query: 130 KQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR 8
KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR
Sbjct: 138 KQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRLR 178
>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 191
Score = 219 bits (536), Expect = 2e-58
Identities = 103/131 (78%), Positives = 116/131 (88%)
Frame = -1
Query: 669 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 490
P SKTY PRRPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLTL+E
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64
Query: 489 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 310
KDPKRLFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHH
Sbjct: 65 KDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124
Query: 309 ARILIRQRHIR 277
AR+LI QRHIR
Sbjct: 125 ARVLIFQRHIR 135
Score = 74.9 bits (176), Expect = 1e-14
Identities = 31/41 (75%), Positives = 37/41 (90%)
Frame = -3
Query: 130 KQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR 8
KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR
Sbjct: 138 KQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRLR 178
>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 48.4 bits (110), Expect = 1e-06
Identities = 28/110 (25%), Positives = 49/110 (44%)
Frame = -1
Query: 606 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 427
+++ ++ Y + + E + + R+ A L L+ DP RL N LL +L +G+
Sbjct: 28 RDVMVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGI 87
Query: 426 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 277
L K D + RRL + K +++ + A LI Q H+R
Sbjct: 88 LPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVR 137
>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -1
Query: 411 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 280
+++D L + +E FL++ TQ+ +A I + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175
>SPAC21E11.03c |pcr1|mts2|transcription factor
Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 171
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 236 QIQAAAIRAPLLSHRICLCRIKILA*WMDF 325
Q +A +++ LL+H+ C C +KI + DF
Sbjct: 60 QQEAFRLKSQLLAHQGCQCSVKIRSVLTDF 89
>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 684
Score = 25.8 bits (54), Expect = 6.3
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +2
Query: 2 PLXEVLPLDTSRTTSTEWRFQREV----NVLARVQAHNK*WDVHNLLADNYYQTNASYYE 169
PL ++P S T + E Q+ V N L R + + ++L+DN+ Q +++ Y+
Sbjct: 355 PLQAMIP-SISNTKNAESSSQKAVRTYENYLVRTDPRER--SIKSMLSDNFLQRSSNNYD 411
Query: 170 N 172
N
Sbjct: 412 N 412
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = -3
Query: 382 D*GLLGASSADAGVQSWPGEVHPSCQNFDP 293
D GLLGA+S GVQS PG P P
Sbjct: 1521 DYGLLGAASPYKGVQS-PGYTSPFSSAMSP 1549
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,620
Number of Sequences: 5004
Number of extensions: 56857
Number of successful extensions: 160
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -