Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_A19
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.9  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   6.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.0  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 602 SWSRRAFSKGRRGVTYVFENTDGTL 676
           S++  + S  +  +TYV++N +GTL
Sbjct: 201 SFAIESISYEQTAITYVWKNDEGTL 225


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 602 SWSRRAFSKGRRGVTYVFENTDGTL 676
           S++  + S  +  +TYV++N +GTL
Sbjct: 201 SFAIESISYEQTAITYVWKNDEGTL 225


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 602 SWSRRAFSKGRRGVTYVFENTDGTL 676
           S++  + S  +  +TYV++N +GTL
Sbjct: 252 SFAIESISYEQTAITYVWKNDEGTL 276


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 602 SWSRRAFSKGRRGVTYVFENTDGTL 676
           S++  + S  +  +TYV++N +GTL
Sbjct: 201 SFAIESISYEQTAITYVWKNDEGTL 225


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = +2

Query: 35  RTTSTEWRFQREVNVLARVQAHNK*WDVHNLLADNYYQTNASYYENTNCFK 187
           RT     R  + ++ L+    HN     +N   +NY   N +   N NC K
Sbjct: 303 RTERERSREPKIISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKK 353


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 364 LQEVLNLQTKHIIEFHLFFIQYSNTNQ 444
           ++ V N+  K  + F L F+Q  N N+
Sbjct: 42  IRPVQNMTEKVHVNFGLAFVQLINVNE 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,833
Number of Sequences: 438
Number of extensions: 4164
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)