Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_A18
         (792 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1384 + 29786028-29786657,29788581-29788711,29788987-297890...    32   0.60 
04_03_0520 - 16748646-16748741,16748821-16748895,16749260-167493...    29   4.2  
03_05_1157 + 30816143-30816359,30817005-30817120                       28   7.4  
11_01_0564 - 4447078-4448519,4449465-4449711                           28   9.8  
11_01_0475 - 3669734-3671452                                           28   9.8  
10_01_0352 - 3870921-3871272,3871383-3871479,3871541-3871621,387...    28   9.8  
03_04_0092 + 17255548-17256046,17257838-17258262                       28   9.8  
01_07_0187 + 41862342-41862622,41862730-41862912,41863236-418632...    28   9.8  

>06_03_1384 +
           29786028-29786657,29788581-29788711,29788987-29789028,
           29789383-29789441,29789774-29790070,29790180-29790289,
           29790966-29791070,29791201-29791263,29791766-29791933,
           29792111-29792248
          Length = 580

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
 Frame = -3

Query: 286 GDVNISGGEGGAVGDAQVEVFLETPTRFNQNFGLEKLPGTKLRR------CVVCSNKGG- 128
           G V   GG GGA   A+ E  L+    F++NFG +   G ++ R      C     KG  
Sbjct: 137 GGVGAGGGGGGAADGAETERPLDKTFGFSKNFGAKYELGKEVGRGHFGHTCSAVVKKGEY 196

Query: 127 KGVTRAXRVCVRXK 86
           KG T A ++  + K
Sbjct: 197 KGQTVAVKIIAKAK 210


>04_03_0520 -
           16748646-16748741,16748821-16748895,16749260-16749362,
           16749635-16749783,16750986-16751110,16751320-16751389
          Length = 205

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 447 QTKMRTMLSLPKWNQSLLMRVCGMTMKMARTMT 349
           Q K+   + LP  + SL +   G TMK+ART T
Sbjct: 170 QQKVHVQIDLPSQSSSLSITKKGQTMKVARTNT 202


>03_05_1157 + 30816143-30816359,30817005-30817120
          Length = 110

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 371 IVIPHTLINKLWFHFGSDSIVLIFVW 448
           ++IPH  +NK  FH  S +++LIF+W
Sbjct: 85  LIIPHDTLNKGKFHKRS-NLLLIFLW 109


>11_01_0564 - 4447078-4448519,4449465-4449711
          Length = 562

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 262 EGGAVGDAQVEVFLETPTRFNQNFGLEKLPGTKLRRCVVCSNKGG 128
           + GA+    V   +  PT     +GLEK+P +   R V+  + GG
Sbjct: 175 DAGAIAGLNVMRIINEPTAAALAYGLEKMPVSNKGRMVLVFDLGG 219


>11_01_0475 - 3669734-3671452
          Length = 572

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 492 SSGSTHFRFAGPLCEEEELFDAID 563
           SSG+ HFR +G +   +E+F A++
Sbjct: 486 SSGAKHFRVSGSVASPDEIFAALE 509


>10_01_0352 -
           3870921-3871272,3871383-3871479,3871541-3871621,
           3874854-3875028,3875650-3875661
          Length = 238

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 337 GEDDSNMEMTGFDGSATGDVNISGGEGGAVGDA 239
           G D + +     +G A G   + GG  G VGDA
Sbjct: 127 GSDPNGVGRRAPEGRAPGCARVEGGSSGTVGDA 159


>03_04_0092 + 17255548-17256046,17257838-17258262
          Length = 307

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/57 (26%), Positives = 22/57 (38%)
 Frame = -3

Query: 325 SNMEMTGFDGSATGDVNISGGEGGAVGDAQVEVFLETPTRFNQNFGLEKLPGTKLRR 155
           ++ +  G  G   G+   + G G AVG    E+ L         FG +  P  K  R
Sbjct: 2   ASRDFLGVFGGGGGERRAANGSGSAVGGESDEIELSLGLSLGGRFGTDMSPDAKRAR 58


>01_07_0187 +
           41862342-41862622,41862730-41862912,41863236-41863299,
           41863547-41863756,41863850-41864035,41864180-41864478,
           41864584-41864731,41864798-41864863,41864945-41865217,
           41865523-41865741,41865864-41866013
          Length = 692

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 359 RAIFIVIPHTLINKLWFHFGSDSIVLIFVWY 451
           R   + +P TL+++LW HF     +  +V Y
Sbjct: 142 RLAILQLPFTLLSRLWVHFACLCFISFYVVY 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,507,012
Number of Sequences: 37544
Number of extensions: 355094
Number of successful extensions: 1271
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)