Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_A18
         (792 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)                   33   0.35 
SB_58267| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.5)            32   0.61 
SB_23915| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_17327| Best HMM Match : DUF1161 (HMM E-Value=3)                     30   1.9  
SB_58368| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_47975| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_46967| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-19)                 28   7.5  
SB_18393| Best HMM Match : RCSD (HMM E-Value=2.6)                      28   7.5  
SB_12450| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_56113| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)                28   10.0 
SB_35972| Best HMM Match : DUF1379 (HMM E-Value=5.5)                   28   10.0 
SB_24087| Best HMM Match : rve (HMM E-Value=2.2e-17)                   28   10.0 
SB_12746| Best HMM Match : DUF1379 (HMM E-Value=5.5)                   28   10.0 
SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17)                   28   10.0 
SB_54171| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   10.0 
SB_48899| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   10.0 
SB_36000| Best HMM Match : DUF1379 (HMM E-Value=4.8)                   28   10.0 
SB_35867| Best HMM Match : Fibrinogen_C (HMM E-Value=6.5e-13)          28   10.0 
SB_32624| Best HMM Match : rve (HMM E-Value=0.00042)                   28   10.0 
SB_27713| Best HMM Match : CKS (HMM E-Value=2.4)                       28   10.0 
SB_23421| Best HMM Match : rve (HMM E-Value=1.8e-18)                   28   10.0 
SB_21695| Best HMM Match : RVT_1 (HMM E-Value=0.00068)                 28   10.0 

>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
          Length = 761

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
 Frame = +2

Query: 299 IKTSHFHIRIVLSVISFVIVRAIFIVIP--HTLINKLWFHFGS-DSIVLIFVWYRHKFV- 466
           +  S F + +++ V+  V+V  + +      T +N L  +  + D + L+FV  ++ F+ 
Sbjct: 598 VLASVFAVLVLIGVVGNVLVCLVILRFSSMRTPMNYLLLNLAAADLLTLLFVSPQYVFIH 657

Query: 467 -FCRTRGTCFQWIYAFSFR 520
            F    G CF + +AF+FR
Sbjct: 658 TFVHPIGECFSFFFAFAFR 676


>SB_58267| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.5)
          Length = 722

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 23/77 (29%), Positives = 33/77 (42%)
 Frame = +2

Query: 188 TKILIESGWCL*ENFNLCIADCSTFTSRNINISSCRAIKTSHFHIRIVLSVISFVIVRAI 367
           T   ++    L E F L   D    TS +I  S    I      I  V+ +I   I+  I
Sbjct: 640 TTAFVQEQQTLAEGFFLSCDDTRHQTSSSIITSIIIIITIIIIIIVFVIIIIIITIITTI 699

Query: 368 FIVIPHTLINKLWFHFG 418
            I+I   +IN+L+ H G
Sbjct: 700 IIIITIAIINRLYHHHG 716


>SB_23915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 365

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +2

Query: 254 STFTSRNINISSCRAIKT---SHFHIRIVLSVISFVIVRAIFIVIPHTLINKL 403
           S  T   +++   R I T    HF  R VL V+ FV V +I IV+P+ L+ +L
Sbjct: 108 SVMTLLGMSMERYRLIVTPFRQHFGPRTVLGVVVFVWVLSIAIVLPYMLVLRL 160


>SB_17327| Best HMM Match : DUF1161 (HMM E-Value=3)
          Length = 345

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +2

Query: 335 SVISFVIVRAIFIVIPHTLINKLWFHFGSDSIVLIFVWYRHKFVFCRTRG--TCFQWIY 505
           +++S  +   I   I +T  NKL  H  +D  VL ++    K   CR +G  T FQ +Y
Sbjct: 178 TIVSKCVTSYISEFIGNTSTNKLDVHCTADKAVLSYIVMDRKLNVCRWQGYWTLFQLLY 236


>SB_58368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +3

Query: 507 HFRFAG-PLCEEEELFDAIDGLFGL--LTATGVEEGLESRSVSNLVITDCLCCDDLGPGL 677
           H R +G PLC   +     +G F    LT T +E  LES ++++L I     CDD+  G+
Sbjct: 66  HARSSGSPLCFYLKPVSLSNGRFSFEDLTYTSLEVVLESSTIASLCIFR-RSCDDVMNGI 124

Query: 678 EV 683
           EV
Sbjct: 125 EV 126


>SB_47975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 501 IHWKQVPLVLQKTNL*RYQTK 439
           +H++ +P V+QKTNL RY  K
Sbjct: 24  VHFRSMPRVVQKTNLTRYNLK 44


>SB_46967| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-19)
          Length = 341

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +2

Query: 272 NINISSCRAIKTSHFHIRIVLSVISFVIVRAIFIVIPHTLINKLWFHFGSDSIVLIFVW 448
           NI+   C A+  +   I     +   V+    +I+I H +  KLW      SIVL  VW
Sbjct: 96  NIHHKVCLAMDITSRFIAYSTVLHLLVVTLERYIMIVHAMKYKLWITKKRTSIVLTSVW 154


>SB_18393| Best HMM Match : RCSD (HMM E-Value=2.6)
          Length = 249

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 561 Q*HQITLLPHKVDQRNENA*IHWKQVPLVLQKTNL*RYQTKMR 433
           Q H+I+L  HK   R     +   + PL   KT L +Y+T +R
Sbjct: 103 QQHKISLQQHKTRLRQHKTPLRQHKTPLRQHKTPLRQYKTPLR 145


>SB_12450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +2

Query: 236 LCIADCSTFTSRNINISSCRAIKTS-HFHIRIVLS-VISFVI 355
           LC+   STFT  +I+I  C A++    + I +    V+SF++
Sbjct: 63  LCLCAVSTFTITSISIDRCLAVRLKMDYPITVTFKRVVSFIV 104


>SB_56113| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
          Length = 1163

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 520 AKRKCVDPLEAGPSGSAKDEFVTIPDE 440
           A+ K  D +   P+GS   E +T+PD+
Sbjct: 745 ARHKAADAISRHPTGSTTPEMMTLPDD 771


>SB_35972| Best HMM Match : DUF1379 (HMM E-Value=5.5)
          Length = 325

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 520 AKRKCVDPLEAGPSGSAKDEFVTIPDE 440
           A+ K  D +   P+GS   E +T+PD+
Sbjct: 234 ARHKAADAISRHPTGSTTPEMMTLPDD 260


>SB_24087| Best HMM Match : rve (HMM E-Value=2.2e-17)
          Length = 1229

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 520 AKRKCVDPLEAGPSGSAKDEFVTIPDE 440
           A+ K  D +   P+GS   E +T+PD+
Sbjct: 679 ARHKAADAISRHPTGSTTPEMMTLPDD 705


>SB_12746| Best HMM Match : DUF1379 (HMM E-Value=5.5)
          Length = 398

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 520 AKRKCVDPLEAGPSGSAKDEFVTIPDE 440
           A+ K  D +   P+GS   E +T+PD+
Sbjct: 172 ARHKAADAISRHPTGSTTPEMMTLPDD 198


>SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17)
          Length = 1013

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 520 AKRKCVDPLEAGPSGSAKDEFVTIPDE 440
           A+ K  D +   P+GS   E +T+PD+
Sbjct: 93  ARHKAADAISRHPTGSTTPEMMTLPDD 119


>SB_54171| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 520 AKRKCVDPLEAGPSGSAKDEFVTIPDE 440
           A+ K  D +   P+GS   E +T+PD+
Sbjct: 51  ARHKAADAISRHPTGSTTPEMMTLPDD 77


>SB_48899| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 520 AKRKCVDPLEAGPSGSAKDEFVTIPDE 440
           A+ K  D +   P+GS   E +T+PD+
Sbjct: 209 ARHKAADAISRHPTGSTTPEMMTLPDD 235


>SB_36000| Best HMM Match : DUF1379 (HMM E-Value=4.8)
          Length = 420

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 520 AKRKCVDPLEAGPSGSAKDEFVTIPDE 440
           A+ K  D +   P+GS   E +T+PD+
Sbjct: 272 ARHKAADAISRHPTGSTTPEMMTLPDD 298


>SB_35867| Best HMM Match : Fibrinogen_C (HMM E-Value=6.5e-13)
          Length = 445

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 594 VEEGLESRSVSNLVITDCLCCDDLGPGLEVGFGLDGV 704
           + EG+ SR  S   IT    CD L   +   FGLDG+
Sbjct: 85  IREGIFSRLESMEWITCTQMCDQLDDCVSYNFGLDGM 121


>SB_32624| Best HMM Match : rve (HMM E-Value=0.00042)
          Length = 415

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 520 AKRKCVDPLEAGPSGSAKDEFVTIPDE 440
           A+ K  D +   P+GS   E +T+PD+
Sbjct: 93  ARHKAADAISRHPTGSTTPEMMTLPDD 119


>SB_27713| Best HMM Match : CKS (HMM E-Value=2.4)
          Length = 86

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 612 SRSVSNLVITDCLCCDDLGPGLEVGFGLDGV 704
           SR +  L++   LCCDD+   +E G GL  V
Sbjct: 21  SRPLLLLLLLARLCCDDMSERIERGIGLRDV 51


>SB_23421| Best HMM Match : rve (HMM E-Value=1.8e-18)
          Length = 838

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 520 AKRKCVDPLEAGPSGSAKDEFVTIPDE 440
           A+ K  D +   P+GS   E +T+PD+
Sbjct: 286 ARHKAADAISRHPTGSTTPEMMTLPDD 312


>SB_21695| Best HMM Match : RVT_1 (HMM E-Value=0.00068)
          Length = 1502

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 520  AKRKCVDPLEAGPSGSAKDEFVTIPDE 440
            A+ K  D +   P+GS   E +T+PD+
Sbjct: 999  ARHKAADAISRHPTGSTTPEMMTLPDD 1025


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,110,344
Number of Sequences: 59808
Number of extensions: 386537
Number of successful extensions: 1166
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)