Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_A18
         (792 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72514-9|CAA96680.3|  449|Caenorhabditis elegans Hypothetical pr...    33   0.23 
Z68001-3|CAO78709.1|  449|Caenorhabditis elegans Hypothetical pr...    33   0.23 
Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U53342-5|AAA96217.1|  178|Caenorhabditis elegans Hypothetical pr...    30   2.2  
U00066-1|AAA50742.1|  490|Caenorhabditis elegans High incidence ...    29   3.8  
U56963-6|AAB38123.3|  324|Caenorhabditis elegans Serpentine rece...    29   5.0  

>Z72514-9|CAA96680.3|  449|Caenorhabditis elegans Hypothetical
           protein T10B10.8 protein.
          Length = 449

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 19/84 (22%), Positives = 37/84 (44%)
 Frame = +2

Query: 278 NISSCRAIKTSHFHIRIVLSVISFVIVRAIFIVIPHTLINKLWFHFGSDSIVLIFVWYRH 457
           +  +C ++ T++  + + L VI  VI R +  VI    ++ +  H  S SI L  +W+  
Sbjct: 273 DFDTCVSLATTNCLLIVSLLVIKLVIERFVVNVISTRSVSSIETHLVSQSIYLFSMWFAL 332

Query: 458 KFVFCRTRGTCFQWIYAFSFRWST 529
           K      +       +  +  W+T
Sbjct: 333 KLAHPSAQPVAAWVFFTSNLAWTT 356


>Z68001-3|CAO78709.1|  449|Caenorhabditis elegans Hypothetical
           protein T10B10.8 protein.
          Length = 449

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 19/84 (22%), Positives = 37/84 (44%)
 Frame = +2

Query: 278 NISSCRAIKTSHFHIRIVLSVISFVIVRAIFIVIPHTLINKLWFHFGSDSIVLIFVWYRH 457
           +  +C ++ T++  + + L VI  VI R +  VI    ++ +  H  S SI L  +W+  
Sbjct: 273 DFDTCVSLATTNCLLIVSLLVIKLVIERFVVNVISTRSVSSIETHLVSQSIYLFSMWFAL 332

Query: 458 KFVFCRTRGTCFQWIYAFSFRWST 529
           K      +       +  +  W+T
Sbjct: 333 KLAHPSAQPVAAWVFFTSNLAWTT 356


>Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical
           protein F07B10.4 protein.
          Length = 724

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = +2

Query: 302 KTSHFHIRIVLSVISFVIVRAIFIVIPHTLINKLWFHFGSDSIVLIFVWYRHKFVFCRTR 481
           KT  +HI++ +  +   +++A+F+V+P T I  L  +F S  I      Y +  +    +
Sbjct: 627 KTVKYHIQVTVLFLCSCVIQALFVVLPVTHI-VLCVYFDSFKIYTKDYIY-YSLLTQAHQ 684

Query: 482 GTCFQWIYAFS 514
           GT F   Y  S
Sbjct: 685 GTAFTLFYVLS 695


>U53342-5|AAA96217.1|  178|Caenorhabditis elegans Hypothetical
           protein F01G12.1 protein.
          Length = 178

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 383 HTLINKLWFHFGSDSIVLIFVW-YRHKFVFCRTRGTCF-QWIYA 508
           HT+  K+WFH+G D +VL   W    K       G  F  WI+A
Sbjct: 116 HTM--KMWFHWGFDEVVLFDFWRIDDKNALAVILGAGFGHWIFA 157


>U00066-1|AAA50742.1|  490|Caenorhabditis elegans High incidence of
           males (increasedx chromosome loss) protein 10 protein.
          Length = 490

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -3

Query: 232 EVFLETPTRFNQNFGLEKLPGTKLRRCVVCSNKGGKGVTRAXRVCVRXKKGXP 74
           E  L +P +  Q     K    +LR C+  S KG +    A  +C+  +K  P
Sbjct: 240 EEVLTSPEQLKQEMEERKRHIEELRDCLESSKKGLQAKLEAREICINSEKNVP 292


>U56963-6|AAB38123.3|  324|Caenorhabditis elegans Serpentine
           receptor, class v protein31 protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 643 IVFVVTTWGLASKSALVWMAWNFLHF 720
           ++F  TTWGL +K  +  M + + HF
Sbjct: 59  MIFYTTTWGLRTKPGIREMLYTYQHF 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,667,257
Number of Sequences: 27780
Number of extensions: 294393
Number of successful extensions: 817
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)