Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_A18
         (792 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27980.1 68414.m03427 pyridoxal-dependent decarboxylase famil...    33   0.29 
At4g29220.1 68417.m04180 phosphofructokinase family protein simi...    30   1.5  
At5g58950.1 68418.m07384 protein kinase family protein concontai...    29   3.5  
At1g20160.1 68414.m02521 subtilase family protein similar to sub...    29   3.5  
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea...    28   8.2  

>At1g27980.1 68414.m03427 pyridoxal-dependent decarboxylase family
           protein similar to sphingosine-1-phosphate lyase [Homo
           sapiens] GI:10129683; contains Pfam profile PF00282:
           Pyridoxal-dependent decarboxylase conserved domain
          Length = 544

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -3

Query: 517 KRKCVDPLEAGPSGSAKDEFVTIPDEDENNAVAPKMEPEFVNESMW 380
           K+K VD L++G S   K++   +P +     V  KME E  N+++W
Sbjct: 84  KQKVVDQLQSGSSSKKKNKTEVLPVKGLGVEVLEKMENEKRNDAIW 129


>At4g29220.1 68417.m04180 phosphofructokinase family protein similar
           to phosphofructokinase [Amycolatopsis methanolica]
           GI:17432243; contains Pfam profile PF00365:
           Phosphofructokinase
          Length = 473

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 24/72 (33%), Positives = 35/72 (48%)
 Frame = +3

Query: 486 PASSGSTHFRFAGPLCEEEELFDAIDGLFGLLTATGVEEGLESRSVSNLVITDCLCCDDL 665
           P S   THFR AGP   +   F++ D L  ++T  G+  GL      N VI + +C    
Sbjct: 69  PDSPRGTHFRRAGP--RQRVYFESDDVLACIVTCGGLCPGL------NTVIREIVCGLSY 120

Query: 666 GPGLEVGFGLDG 701
             G++   G+DG
Sbjct: 121 MYGVKRILGIDG 132


>At5g58950.1 68418.m07384 protein kinase family protein concontains
           protein kinase domain, Pfam:PF00069
          Length = 525

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 463 EFVTIPDEDENNAVAPKMEPEFVNE 389
           + +T+PD+D+N  +  ++E +F  E
Sbjct: 234 KLITVPDDDDNGCLGARLEKQFTKE 258


>At1g20160.1 68414.m02521 subtilase family protein similar to
           subtilisin-type protease precursor GI:14150446 from
           [Glycine max]
          Length = 769

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -3

Query: 313 MTGFDGSATGDVNISGGEGGAVGDAQVEVFLETPTRFNQNFGLEKLPGTK 164
           ++GF G+ +  V  +    G  G+A   V +ETP  FN     EKL  TK
Sbjct: 672 ISGFKGNGSKTVTRTVTNVGEDGEAVYTVSVETPPGFNIQVTPEKLQFTK 721


>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
           family protein similar to signal transducer and
           activator of transcription interacting protein 1
           (GI:15929722) {Mus musculus}; similar to hypothetical
           protein GB:AAD43147 GI:5430747 from (Arabidopsis
           thaliana); contains Pfam PF00400: WD domain, G-beta
           repeat (11 copies, 2 weak)
          Length = 840

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -3

Query: 502 DPLEAGPSGSAKDEFVTIPDEDENNAVAPKMEPEFVNESMW 380
           +PLE    G   D F T+P+        P +E +    ++W
Sbjct: 550 EPLERNGGGEGLDTFETVPEAAPAELKEPPIEDQLAFHTLW 590


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,080,780
Number of Sequences: 28952
Number of extensions: 282163
Number of successful extensions: 868
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)