Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_A17
(592 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 33 0.024
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 31 0.13
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 29 0.67
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 28 0.89
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 26 4.7
SPBC25B2.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 4.7
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 25 6.2
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 25 6.2
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|... 25 6.2
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 25 8.3
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 25 8.3
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 33.5 bits (73), Expect = 0.024
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = -1
Query: 589 WSNNGRILVASSTDGXCSIITF 524
W+++G +L+ +S DG CS+ITF
Sbjct: 427 WNDDGNVLLMTSIDGFCSVITF 448
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 31.1 bits (67), Expect = 0.13
Identities = 37/156 (23%), Positives = 73/156 (46%), Gaps = 6/156 (3%)
Frame = -1
Query: 457 ETQDEKP-ATQTEAPKPTKIDSFIKFKAPEKSPKNLK-----TQTEIKTPVKIDFLEEVA 296
ET + P A + +K+D+ + K ++SP L+ T +++ P + EEV+
Sbjct: 9 ETPSKLPDALLVNSDPASKVDN-VSVKIEQESPLALEGSPLPTVSDV-LPETNNAHEEVS 66
Query: 295 NPSWSDNSNNEIIKHRASEPMGSDVTVIEDSGDIKLVYEETEGVKSPPKTQQANKLETKS 116
+ SWS +S++ I+ + + + DV+V+ +E + S + ++S
Sbjct: 67 SSSWSLSSSDSIMSY---DSLSDDVSVLSFLDCPLTTFETAPSIASFSNSAADVSSHSRS 123
Query: 115 KQNTSPKDNQFFRQAQGDRCQTANSGNSVQS*SASE 8
+ S K ++F + A ++NS +S S S SE
Sbjct: 124 SSSWSAKLSRFTKHASKPSL-SSNSSDSSFSKSGSE 158
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 28.7 bits (61), Expect = 0.67
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -1
Query: 313 FLEEVANPSWSDNSNNEIIKHRASEPMGSDVTVIEDSGDIKLVYEETEGVK 161
F +++ P + N N IKH+ G V + +S DIK+ EG +
Sbjct: 191 FRQQMRMPCNACNGNGRTIKHKCPRCKGERVAEVVESFDIKVPAGAPEGYR 241
>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
Alp13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 28.3 bits (60), Expect = 0.89
Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Frame = -1
Query: 361 KNLKTQTEIKTPVKIDFLEEVANPSWSDNSNNEIIKHRASEPMGSDVTVIEDSGDIKLVY 182
+NLKTQ E+K + + S S S ++ + S + + + GD +
Sbjct: 62 ENLKTQKELKNAAISTRQKPTSKKSASSTSKHDSTGVKTSGKRSRESSTVTVDGDSHELP 121
Query: 181 EETEGVKS----PPKTQQANKLETKSKQNTSPKDNQ 86
+ KS P + ++ + K+++ T P++N+
Sbjct: 122 SRIKTQKSESPIPQQVKRDGTTDAKNEETTKPENNE 157
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 4.7
Identities = 16/82 (19%), Positives = 44/82 (53%)
Frame = -1
Query: 436 ATQTEAPKPTKIDSFIKFKAPEKSPKNLKTQTEIKTPVKIDFLEEVANPSWSDNSNNEII 257
++ +E+ + + + K ++ +S + +++ E + VKI+ +E ++ S S++S++E
Sbjct: 117 SSSSESEEEVIVKTEEKKESSSESSSSSESEEEEEAVVKIEEKKESSSDSSSESSSSESE 176
Query: 256 KHRASEPMGSDVTVIEDSGDIK 191
+S + V+E + + K
Sbjct: 177 SESSSSESEEEEEVVEKTEEKK 198
>SPBC25B2.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 125
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -1
Query: 370 KSPKNLKTQTEIKTPVKIDFLEEVANPSWSDNSNNEIIKH 251
+SP L T I+ P K+ E N + S + I KH
Sbjct: 23 RSPSQLPTSVNIEDPSKLCISSEKLNTPMHNRSRSGIKKH 62
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 6.2
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -1
Query: 451 QDEKPATQTEAPKPTKIDSFIKFKAPEKSPKNLKTQTEIKTPVKIDFLEEVANPSWSDNS 272
Q P TQ+ T + F+K PE S +LK+ I PVK ++ D
Sbjct: 301 QPTAPYTQSNELLETSV--FVKNIPPETSDVSLKSAMSIFGPVKAIEFARRKGTAYVDFV 358
Query: 271 NNEIIK 254
N+E ++
Sbjct: 359 NHECVQ 364
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 25.4 bits (53), Expect = 6.2
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 9/125 (7%)
Frame = -1
Query: 442 KPATQTEA---PKPTKIDSFIKFKAPEKS-PKNLKTQTEIKTPVKIDFLEEVANPSWSDN 275
KP T + P+ T + +K K EK P +EIK V + V + +++
Sbjct: 729 KPNTDAKTNLLPEKTFNEEAVKQKETEKEVPPTGPKASEIKDSVSSN--NAVPSSTFNFV 786
Query: 274 SNNEIIKHRASEPMGSDVTVIEDSGDIKLVYEETEGVKS-----PPKTQQANKLETKSKQ 110
S + + +E + T + K E+TE K T+QANK + S +
Sbjct: 787 SPFAAVSEKTNENNIPNDTTKTNGNATKRTLEQTEDAKPFAFSFGSTTEQANKKASTSNE 846
Query: 109 NTSPK 95
T P+
Sbjct: 847 TTKPQ 851
>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 714
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = -1
Query: 154 PKTQQANKLETKSKQNTSPKDNQFFRQAQGDRCQTANSGNSVQS 23
P+T +NK +K K+++ +N F + + +T++S N+ QS
Sbjct: 101 PQTASSNKTFSKRKRSS---ENSFNNRNKAKSSETSDSSNTSQS 141
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -2
Query: 114 NKTLRPKTISSLDRXKVTDVKQPIAATVSSPKAPRRXS 1
NKT + TI +++ + K P A P PR S
Sbjct: 313 NKTSQKSTIKNIENEDHENTKSPAVAIPIDPNQPRYRS 350
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1136
Score = 25.0 bits (52), Expect = 8.3
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 83 ELIVFGRSVLFTFSFQFVGLLRFR-RRLDTFSFLVNQFDIAAVFYDRHV 226
+++ GRS+ SF + +R+ R L + FD VFYD+H+
Sbjct: 575 QILDLGRSLHSCMSFSTLSEIRYSLRELVQDLPSYSLFDTLWVFYDKHI 623
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,967,222
Number of Sequences: 5004
Number of extensions: 33597
Number of successful extensions: 128
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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