Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_A17
(592 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0276 + 2028983-2029070,2030084-2030151,2030317-2031246,203... 31 0.91
03_05_0824 + 27980191-27980243,27980633-27980671,27980974-279820... 29 2.1
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 29 2.1
02_01_0169 - 1166683-1166790,1166981-1167043,1167376-1167447,116... 29 2.1
02_03_0049 + 14421408-14421942,14421988-14422842,14423847-144241... 29 3.7
12_02_0410 + 18701258-18701327,18701398-18701630,18701782-187026... 28 6.4
06_01_0799 - 5964410-5964565,5964709-5964750,5968762-5968803,596... 28 6.4
05_06_0122 - 25775652-25775936,25776027-25776103,25776177-257762... 28 6.4
03_02_0910 + 12317493-12317960,12319678-12319734,12320592-123206... 28 6.4
11_01_0161 - 1327286-1328592,1328819-1329000,1329279-1329436,132... 27 8.5
05_03_0321 + 12363355-12363614,12363689-12364145,12364165-12365718 27 8.5
05_02_0033 + 5847754-5847982,5848308-5848437,5849038-5849116,584... 27 8.5
03_03_0067 + 14230211-14231506 27 8.5
>07_01_0276 + 2028983-2029070,2030084-2030151,2030317-2031246,
2031334-2031415,2031544-2031609,2032606-2033304,
2033422-2035424,2035599-2036173,2037060-2037223,
2037306-2037365,2037475-2037839
Length = 1699
Score = 30.7 bits (66), Expect = 0.91
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Frame = -1
Query: 388 KFKAPEKSPKNLKTQTEIKTPVKIDFLEEVANPSWSDNSNNEIIKHRASEPMGSDVTVIE 209
++ P+K + T++K + L EVAN D+ E+ H +G + E
Sbjct: 1014 RYSHPQKLEDKVNVNTQLKASIVNPMLTEVANRREDDSDQQEVRSHERGIGIGKTGIMSE 1073
Query: 208 D---SGDIKLVYEETEGVKSPPKTQQANKLETKS 116
+ SG +++ K P+ K ET S
Sbjct: 1074 NILGSGSSEVIGAAPSAPKEFPEAPFDPKPETLS 1107
>03_05_0824 +
27980191-27980243,27980633-27980671,27980974-27982023,
27983097-27983262,27983439-27983549,27983637-27983688,
27984691-27984859,27985604-27985883
Length = 639
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/103 (21%), Positives = 48/103 (46%)
Frame = -1
Query: 373 EKSPKNLKTQTEIKTPVKIDFLEEVANPSWSDNSNNEIIKHRASEPMGSDVTVIEDSGDI 194
+K KN + + + P +I P + DNS + + + +S+ +D ++DS
Sbjct: 259 QKLCKNWRLRRFLHRPRRIS---NGTTPVFDDNSGSHLCQDVSSKSFSADDQCLQDSEVD 315
Query: 193 KLVYEETEGVKSPPKTQQANKLETKSKQNTSPKDNQFFRQAQG 65
K E E V+ +Q +++ ++ ++N + +QA+G
Sbjct: 316 KDSVYEREYVQGVLIMEQPKNEDSRMSESGIAQENNWEKQAKG 358
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 29.5 bits (63), Expect = 2.1
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Frame = -1
Query: 352 KTQTEIKTPV--KIDFLEEVANPSWSDNSNNEIIKHRASEPMGSDVTVIE-DSGDIKLVY 182
+ Q +I +P + D LEEV ++ + +H A + +++IE D+G+ + +
Sbjct: 2659 RDQDDITSPKASQEDALEEVGTELPHESLHEN--RHGAKDEQ--TLSLIEPDTGNAEKLP 2714
Query: 181 EETEGVKSPPKTQQANKLETKSKQNTSPKDNQ 86
E + V+SPP T+Q +E+ + S + Q
Sbjct: 2715 NEADSVQSPPCTEQEESIESSYVEVRSTTEGQ 2746
>02_01_0169 -
1166683-1166790,1166981-1167043,1167376-1167447,
1167734-1167811,1168420-1168548,1169373-1169483,
1169587-1169655,1169733-1169870,1170322-1170460,
1170797-1170852,1171677-1171732,1172034-1172078,
1172225-1172303,1172770-1172864,1173074-1173449
Length = 537
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 252 CFIISLLLLSDHEGLATSSKKSILTGVLISVCVFKFLGDFSGALNFM 392
C+I L ++ +ATS K + G+++ + + + + SG NFM
Sbjct: 136 CYIFMFLSIATSNMVATSLAKKNIGGLVLGMLLEPYFVEISGGYNFM 182
>02_03_0049 +
14421408-14421942,14421988-14422842,14423847-14424151,
14424469-14424984
Length = 736
Score = 28.7 bits (61), Expect = 3.7
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Frame = -1
Query: 415 KPTKIDSFIKFKAP--EKS---PKNLKTQTEIKTPVKIDFLEEVA--NPSWSDNSNNEII 257
KP K+DS +KF EK P+N +T +K+PV LE+ A PS S + ++
Sbjct: 391 KPPKMDSLVKFMQNFLEKETTMPRNRYWRTPVKSPVLAKKLEQPAQKRPS-SAPKSKKVW 449
Query: 256 KHRASEPM-GSDVTVIEDSGDIKLVYEE 176
K + P T IED + +E
Sbjct: 450 KEKPKAPAPPPPETEIEDGISFRFFRKE 477
>12_02_0410 +
18701258-18701327,18701398-18701630,18701782-18702639,
18703006-18703865,18704285-18704395,18704486-18704567,
18704643-18704735,18704795-18704989
Length = 833
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 220 TVIEDSGDIKLVYEETEGVKSPPKTQQANKLETKSKQN-TSPKD 92
T IED G T+G +PP + A K+ S+++ +P+D
Sbjct: 32 TRIEDVGQDSSGRHRTDGTNNPPHEEAAGKVPASSEESWRTPRD 75
>06_01_0799 -
5964410-5964565,5964709-5964750,5968762-5968803,
5968903-5968998,5970549-5970630,5973820-5974001
Length = 199
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = -1
Query: 286 WSDNSNNEIIKHRASEPMGSDVTVIEDSGDIKLVYEETEGVKSPPKTQQANKLETKSKQN 107
++ ++ NEII + T + S D+ + EE EG+ Q LE ++
Sbjct: 57 FASSNMNEIIDKYTTHSKNLGKTDKQPSIDLNMRGEELEGLSVEELQQMEKNLEAGLQRV 116
Query: 106 TSPKDNQFFRQ 74
KD QF ++
Sbjct: 117 LCTKDQQFMQE 127
>05_06_0122 -
25775652-25775936,25776027-25776103,25776177-25776281,
25776353-25776542,25776617-25776804,25776882-25777191
Length = 384
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = -1
Query: 430 QTEAPKPTKIDSFIKFKAPEKSPKNLKTQTEIKTPVKIDFLEEVANPSWSDNSNNEII 257
QT +P DS + ++P K+PK+ + + I T I + EE+ +++S I+
Sbjct: 70 QTNSPLGKDADSESETRSPVKTPKSTRPRPGIITGPIIGYEEEILRIQAAEDSRPPIL 127
>03_02_0910 +
12317493-12317960,12319678-12319734,12320592-12320666,
12321219-12321299,12321472-12321546,12321818-12321862,
12321975-12322064,12322153-12322254,12322366-12322420,
12324966-12325027,12325521-12325555,12325877-12326115,
12326219-12328035
Length = 1066
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 457 ETQDEKPATQTEAPKPTKIDSFIKFKAP 374
+ D KP T P+P+K D + K +AP
Sbjct: 721 DDDDRKPKTAAYPPRPSKQDGYSKPRAP 748
>11_01_0161 -
1327286-1328592,1328819-1329000,1329279-1329436,
1329852-1329996,1330083-1330207
Length = 638
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -1
Query: 211 EDSGDIKLVYEETEGVKS-PPKTQQANKLETKSKQNTSPKDNQ 86
+++ ++ +E E KS P K Q NKL+ K+ + +PK +Q
Sbjct: 322 QEASAFEIFVDEDEPNKSGPSKLQDKNKLQDKNMKQDNPKLSQ 364
>05_03_0321 + 12363355-12363614,12363689-12364145,12364165-12365718
Length = 756
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Frame = -1
Query: 415 KPTKIDSFIKFKAP--EKS---PKNLKTQTEIKTPVKIDFLEEVA 296
+P K+DS +KF EK P+N +T +K+PV LE+ A
Sbjct: 678 EPPKMDSLVKFMQNFLEKEITMPRNRYWRTPVKSPVPAKKLEQTA 722
>05_02_0033 +
5847754-5847982,5848308-5848437,5849038-5849116,
5849194-5849251,5849732-5850795,5850899-5851003,
5851369-5851473
Length = 589
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = -2
Query: 399 IRS*NSKRQKNRLKI*KHKQKSKRPSKLTF*RKSPT 292
+++ +SKRQ+N +HK+ K P+K+T +SPT
Sbjct: 486 VQNKSSKRQRNWTDK-QHKKNKKAPAKVTDAHQSPT 520
>03_03_0067 + 14230211-14231506
Length = 431
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 170 FSFLVNQFDIAAVFYDRHVGAHRFAR 247
F FL+NQFD+ Y+ GA R+ R
Sbjct: 363 FQFLINQFDMREAVYNVGRGAWRWRR 388
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,038,096
Number of Sequences: 37544
Number of extensions: 213938
Number of successful extensions: 715
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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