Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_A17
         (592 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30472| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.033
SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.40 
SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013)                 31   0.70 
SB_17329| Best HMM Match : S-antigen (HMM E-Value=0.31)                31   0.93 
SB_18989| Best HMM Match : TLP-20 (HMM E-Value=1.9)                    29   2.1  
SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)                     29   2.1  
SB_29636| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_22903| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-05)                 29   3.8  
SB_4416| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_37672| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)                     28   5.0  
SB_33496| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_29353| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_17140| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_30472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 482

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 17/69 (24%), Positives = 30/69 (43%)
 Frame = -1

Query: 256 KHRASEPMGSDVTVIEDSGDIKLVYEETEGVKSPPKTQQANKLETKSKQNTSPKDNQFFR 77
           K    EP  + + +  +  ++   ++      S P  ++A+K E   + N  PK N+F  
Sbjct: 23  KQELIEPCTTPLIIGIEYENVLQKFQNATSSSSSPTVKEASKTERHPRSNEKPKKNEFLA 82

Query: 76  QAQGDRCQT 50
            A  DR  T
Sbjct: 83  NASNDRSMT 91


>SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1271

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 21/101 (20%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
 Frame = -1

Query: 382 KAPEKSPKNLKTQTEIKTPVK--IDFLEEVANPSWSDNSNNEIIKHRASEPMGSDVTVIE 209
           KAP K+ K++     + +  +  +D +++    + SD  ++ + +    +   +     E
Sbjct: 374 KAPVKAAKDVAKAPAVASTAEQAVDSMKQAQPSAESDTEDSLMAQATVPKETAAVAAPQE 433

Query: 208 DSGDIKLVYEETEGVKSPPKTQQANKLETKSKQNTSPKDNQ 86
           +SGD  +V   T+     P+T QA +  T  +    P+ +Q
Sbjct: 434 ESGDSLMVEASTQAQAPVPQTSQAAQANTLPQTADKPQAHQ 474


>SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013)
          Length = 440

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 34/152 (22%), Positives = 69/152 (45%), Gaps = 11/152 (7%)
 Frame = -1

Query: 457 ETQDEKPATQTEAPKPTKIDSFI--------KFKAPEKSP--KNLKTQTEIKTPVKIDFL 308
           E +DEKP  + E   PTK +S          K + P+K    K  KTQ + ++  + D  
Sbjct: 127 EDEDEKPKKKVEKKTPTKQESSSEEDDSSDDKDEKPKKKADNKGKKTQAKQESSSEDDSS 186

Query: 307 EEVANPSWSDNSNNEIIKHRASEPMGSDVTVIEDSGDIKLVYEETEGV-KSPPKTQQANK 131
           +E  +      ++N+  K +A +   S+     D  + K   +  + V K+P K + +++
Sbjct: 187 DE-EDEKPKKKADNKGKKTQAKQESSSEEDDSSDEEEEKPKKKADDKVKKTPAKQESSSE 245

Query: 130 LETKSKQNTSPKDNQFFRQAQGDRCQTANSGN 35
            ++ +++   PK     +  +    Q ++SG+
Sbjct: 246 DDSSNEEEEKPKKKADVKGKKTPAKQESSSGD 277


>SB_17329| Best HMM Match : S-antigen (HMM E-Value=0.31)
          Length = 646

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 2/123 (1%)
 Frame = -1

Query: 457 ETQDEKPATQTEAPKPTKIDSFIKFKAPEKSP-KNLKTQTEIKTPVKID-FLEEVANPSW 284
           ++Q  K   + +A K     + I    P K   K  +  TE K   + D  ++E  +   
Sbjct: 373 QSQYNKVKKRAKASKQVVSQTVIVKGGPNKKALKEKEKSTEEKEDGEKDPAVKEPGDYKE 432

Query: 283 SDNSNNEIIKHRASEPMGSDVTVIEDSGDIKLVYEETEGVKSPPKTQQANKLETKSKQNT 104
                +++I+ +  E       + E  G+ K   E TE  +   K ++  KLE    +  
Sbjct: 433 DAGKEDDVIEKKTQEDHHEGKKLEEKDGETKKEIERTENAEEKQKVEEKPKLEEPPAKPA 492

Query: 103 SPK 95
           +PK
Sbjct: 493 TPK 495


>SB_18989| Best HMM Match : TLP-20 (HMM E-Value=1.9)
          Length = 487

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 208 DSGDIKLVYEETEGVKSPPKTQQ 140
           D+GD KL  +ET G +SP K Q+
Sbjct: 146 DNGDTKLTEDETNGTQSPNKRQK 168


>SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)
          Length = 693

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 8/134 (5%)
 Frame = -1

Query: 457 ETQDEKPATQTEAPKPTKIDSFIKFKAPEKSPKNLKTQTEIKTPVKIDFLEEVANPSWSD 278
           E ++EKPATQ EA + T   +      P  S  N           K D++   A    + 
Sbjct: 265 EEEEEKPATQNEAKQDTSATN--TQAVPSASAVNTSEIPAATVVEKKDYI--YATKDEAK 320

Query: 277 NSNNEIIKHRASEPMGSDVT----VIEDS--GDIKLVYEETEGVKSPPKTQQAN--KLET 122
            +  E++K +   P  S  T    ++ D   G +K + E+ +   +  KTQ+AN  K E 
Sbjct: 321 QAFKELLKEKEVSPAASWDTAMRLIVNDPRYGALKKMNEKKQAF-NEYKTQRANEEKEEH 379

Query: 121 KSKQNTSPKDNQFF 80
           + K   + +D + F
Sbjct: 380 RRKAKKAREDLRVF 393


>SB_29636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 306

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 2/124 (1%)
 Frame = -1

Query: 457 ETQDEKPATQTEAPKPTKID-SFIKFKAPE-KSPKNLKTQTEIKTPVKIDFLEEVANPSW 284
           E  D+ P    E  KP + D    + + P+  S + L   TE +   K    EE   PS 
Sbjct: 149 EGDDDAPEAFDEEEKPEENDMGGTEEENPDVPSDEPLTGGTE-EDDEKEASEEEEGKPSL 207

Query: 283 SDNSNNEIIKHRASEPMGSDVTVIEDSGDIKLVYEETEGVKSPPKTQQANKLETKSKQNT 104
            D + +    ++  E    D  V E+    +   EET  V+  P+  +A K E   K+  
Sbjct: 208 EDGTEDTPEANKTPEEPKEDEKVTEE----ETPKEETPKVEDAPEEVEAPKEEESPKEED 263

Query: 103 SPKD 92
           +PK+
Sbjct: 264 TPKE 267


>SB_22903| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-05)
          Length = 885

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 4/105 (3%)
 Frame = -1

Query: 364 PKNLKTQTEIKTPVKIDFLEEVANPSWSDNSNNEIIKHRASEPMGSDVTVIE---DSG-D 197
           PK   T  +   P K  +L+   NP         +    + E + SDV+  E   D G D
Sbjct: 663 PKKRTTPIKKGRPTKTVYLQNTDNPCIRGYGRQSLSDSESPEDVHSDVSSSEEEVDKGMD 722

Query: 196 IKLVYEETEGVKSPPKTQQANKLETKSKQNTSPKDNQFFRQAQGD 62
           I ++     G +   +  QA KL+ +       + +   RQ   D
Sbjct: 723 ITILQSRILGARDKLQEYQALKLKHRDTVRQRDELDDVIRQQASD 767


>SB_4416| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 503

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = -1

Query: 445 EKPATQTEAPKPTKIDSFIKFKAPEKSPKNLKTQTEIKTPVKIDFLEEVA-NPSWSDNSN 269
           E+ +T+   P   K    +      K P+N+KTQ + K       ++ V  N S      
Sbjct: 337 EEKSTEQSVPVKKKNKPTVIVAEKRKVPENVKTQEDFKIQEPNYAVQPVEDNQSSKPKKE 396

Query: 268 NEIIKHRASEPMGSDVT 218
             +I+ + ++P G D++
Sbjct: 397 PRLIRPKRNKPKGKDLS 413


>SB_37672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 111 KTLRPKTISSLDRXKVTDVKQPIAATVSSPKAPRR 7
           KT RP+T ++ D    T  +Q  AAT + P+ PR+
Sbjct: 53  KTRRPQTTAAPDNRGNTHRRQITAATRTGPRQPRQ 87


>SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)
          Length = 1457

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 121 KSKQNTSPKDNQFFRQAQGDRCQTANSGNSVQ 26
           K+K+  S  D + F+   GD  +TA  G+S+Q
Sbjct: 625 KNKKTVSRPDQKDFKTTNGDVYKTAGGGHSIQ 656


>SB_33496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1082

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = -1

Query: 256  KHRASEPMGSDVTVIEDSGDIKLVYEETEGVKSPPKTQQANKLETKSKQNTSPKDNQFFR 77
            +H +S         +  SG      E + G +S   +   N    K++ NTS + + F  
Sbjct: 892  QHNSSHGNSPGKVQVNTSGQSSPFVEASRGDQSQHNSSHGNS-PGKAQVNTSGQSSPFVE 950

Query: 76   QAQGDRCQ-TANSGNS 32
             ++GD+ Q  ++ GNS
Sbjct: 951  ASRGDQSQHNSSHGNS 966


>SB_29353| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 410 RFRRFCLSCGLFVLRFHWFWFILSV 484
           ++R+   + G FVLR +  WF+LS+
Sbjct: 137 KYRKIAKAFGTFVLRANSLWFVLSI 161


>SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1434

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 11/146 (7%)
 Frame = -1

Query: 454  TQDEKPATQTEAPKPTKI-DSFIKFKAPEKSPKNLKTQTEIKTPVKIDFLEEVANPSWSD 278
            TQ E    Q       +I +S  +    ++S +    QT+ KT V+   L+E   P   +
Sbjct: 1081 TQQELAVQQATPLNQQQIQESSTQVLEKQQSQEQPVKQTQQKTDVQQATLQE---PQRQE 1137

Query: 277  NSNNEIIKHRASEPMGSDVTVIEDSGDIKLVYEETEGVKSPPK----------TQQANKL 128
             S  + ++    +  G  V   E++   K   EE + +++PP+          TQQ   L
Sbjct: 1138 ESLTKQVQE-TQQSQGQPVKQSEETAP-KQTDEEQQSLENPPQKNTKAIHVQETQQTQTL 1195

Query: 127  ETKSKQNTSPKDNQFFRQAQGDRCQT 50
            +   KQ    KD++  +Q Q  + Q+
Sbjct: 1196 QETPKQPRKQKDHKQTKQQQAGKEQS 1221


>SB_17140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1236

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 157  PPKTQQANKLETKSKQNTSPKDNQFFRQAQ 68
            PPK QQAN+   ++ QN S +D    R  +
Sbjct: 1160 PPKVQQANQKSQRANQN-SQRDENLLRNCE 1188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,011,633
Number of Sequences: 59808
Number of extensions: 249276
Number of successful extensions: 1011
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)